RNA id: TCONS_00040451


Basic Information

Item Value
RNA id TCONS_00040451
length 774
RNA type mRNA
GC content 0.44
exon number 5
gene id XLOC_020371
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 19473804 ~ 19476271 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATggccatcatcatcatctctctgCTCCTGCTGGTTTCTCTGGTGCCACACCTGACCTTCAGTGCTCATGTGGGCATAGTGAACGGCACAGAAGCAAAACCTCATTCCAGACCTTACATGGTTTCTCTTCAGAAGGGCTTTCAACATGTCTGTGGTGGATTCCTCATTTCTGAAAAGTTTGTCTTGACCGCTGCACATTGCCGAATGGGaaatgagatattaactGCTGTGGTTGGTGCACACAACTTAAGAAATAGGTCGGAAAAGTCGGTCCGTATGAAAGTCAAGTCTTACCACTTGCATCCAGACTTCACTGTTAAACCTTGGCGTAATGATGTTATGCTTTTAAAGCTAGTGAAAAAAGTCCAACTAAACAAGAACGTCAAGATCATTTCCATGTCGAAGCAAGAAAGAGACATCAAGCCAGATTCAGCTTGTGCAGTCGCTGGATGGGAAAAACTGAGCTTTAAAGGGAAAGTGAGCACACAGCTCATGGAAGCAGGTGTGAAGATCATGAACAACACAGAATGTGAAAATAAATGGAAGAAAATATACTTACCTTCACAGATGATCTGCGTCTATGGCCATGGAGGAAGCTGCGGTGGGGATTCAGGAGGTCCTTTGGTTTGTGAAGACACTGCAGTTGGTGTCACATCCTTTGGTGATGCAAGAGTCTGCAATAGTCGTAAACGACCTGAGGTTTATATGAAGATTTCAGAGTTTCTTCCATGGATCGATTCCATAATTGGAAACAAAGGGCGTAATTTGCTTTGA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-176 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Orthologous to human GZMM (granzyme M).

Ensembl:

ensembl_id ENSDART00000156818

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042128 lncRNA upstream 877569 18560343 ~ 18596258 (+) False XLOC_020351
TCONS_00042127 lncRNA upstream 904439 18560343 ~ 18569388 (+) False XLOC_020351
TCONS_00042129 lncRNA upstream 904439 18565571 ~ 18569388 (+) True XLOC_020351
TCONS_00042126 lncRNA upstream 1169539 18254860 ~ 18304288 (+) False XLOC_020344
TCONS_00041895 lncRNA downstream 363004 19839275 ~ 19839592 (+) True XLOC_020382
TCONS_00042130 lncRNA downstream 535525 20011796 ~ 20050276 (+) True XLOC_020383
TCONS_00042131 lncRNA downstream 770201 20246472 ~ 20247476 (+) True XLOC_020390
TCONS_00042132 lncRNA downstream 771638 20247909 ~ 20259347 (+) True XLOC_020391
TCONS_00042133 lncRNA downstream 784960 20261231 ~ 20265527 (+) True XLOC_020392
TCONS_00040448 mRNA upstream 18688 19453822 ~ 19455139 (+) True XLOC_020370
TCONS_00040446 mRNA upstream 45020 19425657 ~ 19428807 (+) False XLOC_020362
TCONS_00040447 mRNA upstream 45108 19425725 ~ 19428719 (+) True XLOC_020362
TCONS_00040445 mRNA upstream 56077 19415080 ~ 19417750 (+) True XLOC_020369
TCONS_00040444 mRNA upstream 65726 19407531 ~ 19408101 (+) True XLOC_020368
TCONS_00040452 mRNA downstream 1869 19478140 ~ 19481802 (+) False XLOC_020372
TCONS_00040453 mRNA downstream 1869 19478140 ~ 19482177 (+) True XLOC_020372
TCONS_00040454 mRNA downstream 10440 19486711 ~ 19487232 (+) False XLOC_020373
TCONS_00040455 mRNA downstream 10440 19486711 ~ 19491332 (+) False XLOC_020373
TCONS_00040456 mRNA downstream 10448 19486719 ~ 19491728 (+) True XLOC_020373
TCONS_00040420 other upstream 235601 19237031 ~ 19238226 (+) True XLOC_020360
TCONS_00040385 other upstream 1193387 18247292 ~ 18280440 (+) False XLOC_020344
TCONS_00040386 other upstream 1193387 18253158 ~ 18280440 (+) False XLOC_020344
TCONS_00040387 other upstream 1218972 18254769 ~ 18254855 (+) False XLOC_020344
TCONS_00040381 other upstream 1298449 18166599 ~ 18175378 (+) False XLOC_020342
TCONS_00040469 other downstream 295427 19771698 ~ 19771812 (+) True XLOC_020380
TCONS_00040470 other downstream 316848 19793119 ~ 19793233 (+) True XLOC_020381
TCONS_00040472 other downstream 663254 20139525 ~ 20139592 (+) True XLOC_020385
TCONS_00040475 other downstream 675654 20151925 ~ 20151981 (+) True XLOC_020387
TCONS_00040488 other downstream 1617580 21093851 ~ 21093965 (+) True XLOC_020402