RNA id: XM_021624579.2


Basic Information

Item Value
RNA id XM_021624579.2
length 5960
RNA type mRNA
GC content 0.54
exon number 14
gene id kansl1b
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 65287663 ~ 65369708 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtagattgatgagggtgaaaaaactatttaatccattttagaataaggctgtaacgcaacaaaatgtggaaaacgtgaaggaatctgaatactttctgaatgcactgtacctggAAGACACAGTGGATATTTTTACCCTAAGGATGGATTTGGTTGGAGGTGAGCTTTTCTATTGCAAGgcTGTCCTCTGGCGAGGCGGTAGGTGGGTGGTGTGGAGCTGGCCTCGGCACCGGGAGAGGCCCCCTCGCCCGCCCCCTCCCTGTGCTGCATGGCTGCGATGGCGCCCGCTCTAACCGACGCGCCGGCCGAAGCTCACCGCATCCGCTTCAAACTGGCTCCGCCCTCCTCCAACCTCTCCCCGAGCGGCGTGGAGAGCAGCGGAGGCACCAGTCACATCCTCGTCTCCAGCAACGGCACCGTCAAGCGCAAGGCCCCTGAAGAGCGTGGTCCCCACGGGGGGTCCATCACAGGTAAGGGGAGGGAGGACTCGCCGCGAGGCAACGAGGCTCCTTCCACACCTCTTGGGAAATTACAGCCGCTGGTGGCGTCGTACCTGTGCTCGGACGTGACGTCCGTTCCCTCTACCAAGGAGTCACTGAAGCTGCAAGGCGTCCTACTGCAGAAACACGGCCTTCTGCCCAGCTTCCTGCCCAGGAAACACAAGACACTGGAGCTGTCAGAGGAGCAGCTGAAGAGCATCATGAGTAACAGCAGAGGAGGTGGTCCCCCTGCCCTGTCAAGCTCGCCGCCACCGGTCAACGGCGTGGCCAAGAAGTTGGCCAAAAACGGGGCGGACCGCGACCGGGACAGTATGACAACAGTCAATGGAGGTAATAACAGGCCTCCTGCTGGACATGGACTGGACTCCCCAGTGCACCAGCCCCAACCCCACACAGCTGCCTCTAGAGGAAACTCTCCTCTTAACGGGGGAGGGCAGCACCAGCAGCCCACAGGACTGTCCTACAACCCTGCTGGAAACACTGAACAGCCAGCACCCCCCGCAGCCTCCACCAACACCCCCATGGACTGCCCCGACAGCAAACCCTCAGAACGGCCACCATCGCTGGCCACGGACACATCATCCCTTTCCCCAACGGACCGACAGACCTCTCTGGGCCTGGGCAGCCTTGGAGTGGACGTTAAGGAGAGGACTCAGCAGAGCCAGAGCCGGCAGGGCGAGATCGAGGGGCGTCTGCGGCGCCTGAGGAAGCGCCTCCAGGTGGTTCAGGCCAAGCAGGTGGAGCACCATGTCCAGCAGCAGCTGGGGGGGCTCCTGGAGAGCACCCTGGGGCCACTGGATGCCCTCCGACCTGGCGGGAGACGAGGAGGCCAGGACACCCCCCTCACCCCGCAGGAGAGGGAGGGGCTTGGGCGATTCCTGAAGGACGGCTCTGTACCGGCGGAGCTGGAGCGCTTGTCTCTCAGTGGAACCACCAACCTGAGGTCCACGGAGAGTGCCTTCGACTCGGACGCCACGGAGAGCAGCTCTGGAGGAGAGACGGACGTGGAAGAGGACGAGCTCACCAGGGTGGACATCGAGCAGCGACACATCTCTCTATGGAGACGTGCGGAGGGGCGCTACGCGGTGGATAGGGCCTCCATAGTCAGCCACTGGAACTGGCTGCAGGCCCATGTGTCTGACCTGGAGTACCGCATCCGCCAGCAGACGGACATCTACCGCCAGCTCCGCTCCAACAAGGAGTGTGGCTCAGACGGTGGGGCGGAGGGTCCGGGATCCGTGGAAACGAGCCCGAGGAAAGGGTGCGCGTCCGGGAGACAGGTCAACGGGATCATCAACAGcctgcGGCCTGGCTCTCCCGATGGTTCTGACCCGGAGGAGCAGCTGAGGAAGCAGCAGCAGAACCAGCCCTTGCCCCAGCTACTGTGCTCCCCTCAGGATGACACGTGTGTGTCGGCCCGAACACGGCCCCTCCTCAGCTGCAAGAGACGACGCCTCGTCAGGCCCAGCACCCTCACCAACCTTAACCGCAAGGGCCAGAGGCTGAGCGTACCGGGTCCTCGCTGCGGCTGCGAGGTCAACCCCCAGTGTATGACGTGTGGCGGCcgcaccctctcctcctctgacgtCCAGTATGAGCGCCCTCTACTGGAGAGGCTGTCCCAGTTCGACCCCTGCGTGCACCCCATCCTCTCCCTCACAGACGacGTGGCGATGAGTCTGCACCTGCAGCGCGTCCTCAAGTCCCACTGGAACAGCCGGCCGCTGGAGAAGATCAAACCCCTGAAGAAGCTCTCCCTGAAACACAAGCTTTCCGTGGGACGTCCCCACGACCCCTCCGCCTCCTTCACCCCCAAAGACAAACACAAGATGACCAACTCCCTCCTCTCCACAGTCCGCCTGTCCCACCACAAGGTGCGTTCAGAGAAGCTACACAGGCAGCAGCTGGACAGCCTGCTGGGGTCCACCAAGCTGGAGGGCCGCCCCCACTACCGAGGGGAGCGGGGCCACGGGCCCTACGACAAGAGCCACGCACGCAAGAGGCCCCGAGAACACTCACTGTCACTAGACAGGATGGACAACACCCCTAAGCTGTACCTGGATGGGGGCAGTCTGTGCCCGTCTCTATCTGCTGGGCTCCACACCACCGCCCACAGCTCCCTGCTCCGACAGCTGTCAGCCTCCTCAGAGACCTGCTCCATGCCCTTCACCCCCTTCAACAGCAGCCTGAGGGACAACAGCACCCCGCATCAGCCCATCcgcaggaggaggggagagagctcCTTTGACATCAACAACATCGTCATCCCCATGTCTGTGGCTGCCACCACCCGCGTGGAGAAACTGCAGTACAAAGAGATCCTCACCCCCAGTTGGAAGGAGGTTGACATTTGTGCTAAGCCAATCGCTGAGGAGGCTGACATTGAGGAGgttgAGGACCTGACAGACACTGCATTCTCCCAGCTGCACCAATCCTGCGAGGACCAGGAGCGTTCCCGCTGGAGCTGGACGGCCAGCGCCATCGCCAAGAGGAGAGGCAGCCGTTCATATGTCAGTGGCCGGTCGGACGGTCGCACCACTCCCCTGCTGGGCAGCAACAACCCCTCCTCCCCGGACACAGCCCACTTCCACGCCCTGCCGGACTACGGCAGCGCTGCCTCCCCCTGCTCCCCGGCCAGCCCCGACCTGCAGTCCTACCCCTACGCCCCAGGGTGTTACACAGTAGGAGGGTACTCCTACACCCCTATAGGATCCAGGGACTCCTACCGCCTGCTCTCCAATGAAGACACGCGCTGCTCCACGCCTGACGGAACCTACGAAGAACTGgttCCCATCCCAGTACACCCATGGGACCGAAGGAGCTTCCCCCTGGAGAACGACCCGCCGCCAGAGCCTGAGGAGCAGGCAGGGAACACCGAGGAGCGCCCCTACAGAACCATGCGCCACATCTCTGGCTGCAAGACGGGCTCGTCCAGATCGGAGTCTGACACCGGGGGTCCCCCCTCGCCGCTTCCCCCTGACGACAGCAGCAAGCAGAAAGCCCCCTCCGCCTCCACCACTCTCACCAGACCCTCCCACCGATGAATGAAGGCTCTCCCCGCATAAAGGACTCGTCACTTTTTTTCTTTCACAAGACTCTAAACAAGAACCACATCAACAATGGAATAATGGACTCCTGTTGTTTGATATTCAAACATCAGTCAAATTCTTTCACAGTTTTTAGTGAACACAGACAGAGACCCCCATCAGAAATCAGTTTTGTTCTTTCTTTTCTTGGTCACCGaaatgaacaaatatataaaagtGAATGGGGAGAGAAATTAGACTGAAAGCTGAATTTGTGATGAGCAGGACGTAGAGTCGCTTCCTGTTTCTGGGCCAATGGGCTGAGCGCTAAGCAGCCACTCAGGCAGTGTGTGTACCTTTGTAGCGTTCTATTCCCCACCACCCTATGTCAGTGTAAAATGGAGTGAGTACAACACAAAACAGCAATGCCTTGTTGTCATAGCTTGTTATGTTGTCCCCTTGAATCAACTTAATAAAGAGCCCCAGAGAATCGGAAATGTTCCTTTATGCACTTGTTTCACAGAGCTGTAGTAGTAATCAGTTTGCCATTTTCCTTGATGTCTTGTCTGCTTTTCTTTCCTCCCTGTCTGCATTGGTATAGTTGTTTTCTACATATAGGTTTAATAATATATTTCCTCTCAACCCCGTCACAGACTGATGGCATACGTGGTTGTTGGGGCGGTGTATGAAATTAGCACAGCAAGTAACACCACCCTCAATATGAGATTACACATACACTAGTTTGAATAGATCCTTCAATCAGCCAAGCCAAAGTGAAGCAAATAAATAATCATGTGGATATGTTCACTAATATAACGGCCGAAAAAGACGCATCACCTCATAGAAATGGAGTGGATTTCGGTGTCTTTGTTCAACTGTGCATATTGAATTTGTCTTCATTTTCGATGTGGTGTGCGTGCTGTTCACGCTTTTCTGATTTTGGTTTGGATAATGTGCAAGAAATCACTTAAAAGCGTGCAGTCGGGTTCCAATTACAAAGAAAGCTCCTCTGTTTTTGAATGTAGTATTTTGACTTCATCTTGGATCAAGGCCCTTCATTATTTGTTCCACTTTACATTTCTGTACCCTAGCTATTGACATGGGTTGCTGTTGTTCACATCCGATGCAATGTTTCCAGCTTGTAATGCATAATTGCCATGCAATTTCATGTCACTCAGTATAGTAAAAGAAAACATGAGACAAAAATATGTAAATGTACCTAATTTGTCTCGGTCCTGTGTCCCTATCTGTTTTTGGAATTGCACAAGGCAGATGTCAATGTACCTGTTGGATTGTCAATGCAGTTCCACAATTGGATTAAAATCACTCAAGCTCTTGAGTCTTATTGAGGGTTCAAATGTCATGTTGGTTAAGTCAAATGATTTTCATGTAACAATGCAAAACAAAACTAAgtatgggttgtgttcattagagcAAACAAAATGTTCTGAAATGGTGGACAAGTCCAGGTAAATCCTGCCCGTTATATTCCTTTGGTACCTACTGAACTCTGCCATCAGCTGCCCTAGTTCCCAGCACCCCCTGCTTTGTCCCTCCCTGCAGATGAAGTGGAGTATTGTACAGAAAGCCTCGAAAGAGGCTTATGTTTGAGTCACTACGTCAGAAGGCTGTGGCTATCACCCACCCACCTGCTATGTAGGGCTTTCAGTTGGAGTCAATTTGAGCCTGGCCGTTTCTACTTGGTCACTTTGTGTGTCTGATTCATGCTCTGCCCCAGCAGTCAAACCCACATGTTAGTTAGCTAAACCTACGATTGCCCCAACCAATGCCCTGCTCTTGTTCCAATTACCGCTAGTATGGAATCATGTCATGAGTTGTTTGAGCCTCACAAGAAAAAAATCATTCACATCACTGTTCAGTTGAGCCTTTTTGTCTCTACCTTCCTTGATTCTGCTGTCTCATTTCGAGGAGGTAATGTGAGGCCTTCCCTGGTGAATAATTCTCCCACAGGAGTCTGTCTGTCCAGACCGACCGAAAGACAAACAAACCGGACTCTATTTCTAGGGACCATCGATGCCTATCCCTTTCTCCTCACAGAAGTCCCGCCTTGTGGGTGGGAAGACCCACCAGGCAGAAACTGTTTCGATGTACAATAGGGTTTGACTAGCGTTGAAAAGCCAATATATTGTCTGGGCTATTTTCGTACTTAGAATTTCCAACGTGATGAATGAGGGTGGGTGAGTGGTATATCCTTTAGCATGTAATAGTTTGTACAAAAAGAGTATATTTTGTAAATAATTTAACAGTGTTTGATGTTCAGGCTGTAGCTGTCCTGATTGTATAGGGAGAAGCCACGACAAATACACTATATTGAACACTTTATGcagaggcaaaaaaaaaaaaagtttatggaTTGACGAATCCGACGGGCAGGCAGCGTGTTCTTCtcaaaataaaagtgaaatatatTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1251336 lncRNA upstream 21499 65265943 ~ 65266165 (+) True G1100374
TU1251330 lncRNA upstream 32291 65255166 ~ 65255373 (+) True G1100368
TU1251327 lncRNA upstream 33773 65253637 ~ 65253891 (+) True G1100365
TU1251319 lncRNA upstream 45331 65242115 ~ 65242333 (+) True G1100357
TU1251310 lncRNA upstream 53809 65233535 ~ 65233855 (+) True G1100348
TU1251409 lncRNA downstream 73191 65442899 ~ 65443140 (+) True G1100441
TU1251411 lncRNA downstream 80521 65450229 ~ 65450569 (+) True G1100443
TU1251441 lncRNA downstream 155195 65524903 ~ 65532871 (+) True G1100472
TU1251800 lncRNA downstream 205911 65575619 ~ 65597668 (+) True G1100800
TU1251823 lncRNA downstream 239870 65609578 ~ 65617409 (+) True G1100821
XM_036938088.1 mRNA upstream 3738 65250454 ~ 65283926 (+) False cdc27
XM_036938089.1 mRNA upstream 3738 65267701 ~ 65283926 (+) False cdc27
XM_021624575.2 mRNA upstream 3738 65267797 ~ 65283926 (+) False cdc27
XM_021624576.2 mRNA upstream 3738 65268415 ~ 65283926 (+) True cdc27
XM_021624572.2 mRNA upstream 170285 64951031 ~ 65117379 (+) False crhr1
XM_021624591.2 mRNA downstream 90822 65460530 ~ 65496809 (+) False scn4ab
XM_021624592.2 mRNA downstream 104648 65474356 ~ 65494005 (+) True scn4ab
NM_001124689.1 mRNA downstream 147521 65517229 ~ 65521363 (+) True gh1
XM_021624593.2 mRNA downstream 156864 65526572 ~ 65534174 (+) True rdm1
NM_001160502.1 mRNA downstream 278227 65647935 ~ 65649954 (+) True ifn3
TU1250127 other upstream 911450 64370155 ~ 64376214 (+) False si:dkey-110g7.8
TU1250128 other upstream 911450 64370155 ~ 64376214 (+) True si:dkey-110g7.8
TU1247749 other upstream 1032600 64254612 ~ 64255064 (+) True G1097122
TU1247743 other upstream 1058980 64228001 ~ 64228684 (+) True G1097116
TU1247690 other upstream 1150960 64136358 ~ 64136704 (+) True G1097063
TU1251400 other downstream 63432 65433140 ~ 65433457 (+) True G1100432
TU1252351 other downstream 779501 66149209 ~ 66162833 (+) False LOC110538063
TU1252355 other downstream 796723 66166431 ~ 66168197 (+) True LOC110538063
TU1252863 other downstream 1292256 66661964 ~ 66663457 (+) True LOC110538072
TU1252914 other downstream 1354953 66724661 ~ 66771391 (+) False G1101805

Expression Profile