RNA id: TCONS_00003947


Basic Information

Item Value
RNA id TCONS_00003947
length 501
RNA type processed_transcript
GC content 0.44
exon number 4
gene id XLOC_002036
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 17713022 ~ 17728165 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTCTTTTCTGAAACTACCTATTTCTGGGACCCACTGCATCGTTGGAGCTACTATAGGCTTCTCGCTGGTTGCTAAAGGTCAGCAGGGAGTCAAATGGCTGGAGCTTCTCAGAATTATTGCTTCATGGTTCCTCTCGCCTTTGCTGTCCGGCGTCATGTCTGCCGTCCTTTTCTACTTTGTTCGCATGTTCATCTTGCAAAAGAAGGATCCAGTGCCCAATGGTCTGAGGGCCCTGCCATTTTTCTACGCTGTTACAATGGGCATCAACCTGTTTTCCATCATGTTTACCGGAGCACCGATGCTGGGCTTTGATAAGCTGCCCTGGTGGGGAGTGCTACTCATTTCCATCGGCTTTGGCATCATCACCGCCCTCATCGTTTGGTTTGCTGTTTGCCCACGACTCAAGAAGAAGATCGAATGTAAGTATTgatattttataattgtttaatctAATCATGaaaattttaaaatcaatgtattaaaaaaaatgcgTCATATCA

Function

GO:

id name namespace
GO:0035435 phosphate ion transmembrane transport biological_process
GO:0006817 phosphate ion transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015293 symporter activity molecular_function
GO:0005315 inorganic phosphate transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-260 Predicted to enable inorganic phosphate transmembrane transporter activity. Predicted to be involved in phosphate ion transmembrane transport. Predicted to act upstream of or within phosphate ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC20A1 (solute carrier family 20 member 1).

Ensembl:

ensembl_id ENSDART00000138559

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003942 lncRNA upstream 41813 17669673 ~ 17674093 (+) True XLOC_002033
TCONS_00005861 lncRNA upstream 128029 17583381 ~ 17587877 (+) True XLOC_002032
TCONS_00005858 lncRNA upstream 228537 17459926 ~ 17487369 (+) False XLOC_002031
TCONS_00005862 lncRNA downstream 285992 18007123 ~ 18024486 (+) False XLOC_002042
TCONS_00005700 lncRNA downstream 286024 18007155 ~ 18071506 (+) True XLOC_002042
TCONS_00005863 lncRNA downstream 519419 18240550 ~ 18282435 (+) False XLOC_002043
TCONS_00003959 lncRNA downstream 1077796 18798927 ~ 18802350 (+) False XLOC_002045
TCONS_00005702 lncRNA downstream 1077969 18799100 ~ 18802435 (+) False XLOC_002045
TCONS_00003943 mRNA upstream 24735 17681074 ~ 17691171 (+) True XLOC_002034
TCONS_00003941 mRNA upstream 41561 17592273 ~ 17674345 (+) False XLOC_002033
TCONS_00003937 mRNA upstream 282028 17235370 ~ 17433878 (+) False XLOC_002023
TCONS_00003938 mRNA upstream 283298 17371356 ~ 17432608 (+) True XLOC_002023
TCONS_00003932 mRNA upstream 615087 17088261 ~ 17100819 (+) False XLOC_002018
TCONS_00003949 mRNA downstream 26749 17747880 ~ 17759878 (+) True XLOC_002037
TCONS_00003950 mRNA downstream 55850 17776981 ~ 17780102 (+) True XLOC_002038
TCONS_00003951 mRNA downstream 129803 17850934 ~ 17926298 (+) False XLOC_002039
TCONS_00003952 mRNA downstream 129912 17851043 ~ 17913463 (+) False XLOC_002039
TCONS_00003953 mRNA downstream 154760 17875891 ~ 17926298 (+) True XLOC_002039
TCONS_00003944 other upstream 20566 17695265 ~ 17695340 (+) True XLOC_002035
TCONS_00003940 other upstream 261334 17454490 ~ 17454572 (+) True XLOC_002030
TCONS_00003939 other upstream 262403 17453363 ~ 17453503 (+) True XLOC_002029
TCONS_00003936 other upstream 588458 17127316 ~ 17127448 (+) True XLOC_002022
TCONS_00003935 other upstream 590440 17125340 ~ 17125466 (+) True XLOC_002021
TCONS_00003954 other downstream 168958 17890089 ~ 17890203 (+) True XLOC_002040
TCONS_00003957 other downstream 519667 18240798 ~ 18251068 (+) True XLOC_002043
TCONS_00003963 other downstream 1170916 18892047 ~ 18896604 (+) True XLOC_002046
TCONS_00003965 other downstream 1190044 18911175 ~ 18934541 (+) True XLOC_002047
TCONS_00003994 other downstream 2500235 20221366 ~ 20234045 (+) True XLOC_002060

Expression Profile

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