RNA id: TCONS_00040457


Basic Information

Item Value
RNA id TCONS_00040457
length 866
RNA type mRNA
GC content 0.40
exon number 6
gene id XLOC_020374
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 19494996 ~ 19496507 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACTGATTGTCTTTATCATGACCATCATCATAATCTCTCTGCTCCTGCTGGTTTCTCTGGTGCCGCACCTGACCTTCACTGCTCGTGTGGGTATAGTGAATGGCAAGGAGGCAAAACCTCACTCTAGACCTTACATggtttctattcaattgaatgaAAAACATATCTGTGGTGGATTCCTCATTACTGAAGAGTTTGTCTTGACTGCTGCACATTGCTGGAAAAAAAAGGAAGTGCAGACAGTTGTGGTTGGTGCCCATGATTTAAGTAAAACCAGAACTTTAAAACGCTACGGAGTGAAGTCCTACATCCCGCATCCAGACTATAGACCTAATCGGAATGACATTATGATTTTGAAGATAGATAAAAAGGTCAAACTGAACAACAAGATTAAACCGATATCATTGCCAAGTGATGGTGAACATATTAAAGCAGGTGCTGACTGTAGTGTTGCCGGCTGGGGAGATTTGTGGATGAAAGGCCCACTGAGTGACCGTCTAATGGAAGCAAACGTGACTACAAAAAGTGACAAATACTGCCAAGATAAATGGGGATCTAAATATGTGCCCAAACATATGATCTGTGTTTATGGGCAAGGTGGATCCTGCAAAGGGGATTCAGGAGGTCCTTTGGTTTGTGGAAACACTGCAGTTGGTGTCACATCCTTTGCCAAATGCATGATCACTGGAATTCATCCAAGTATCCTAATGTGTATACTAGGATTTCAGAAGATCGCCAGTGGATTTAGTGTAATTAGAAATTTTAGGAtattttgtgaaaaataaaatggATAAATGCTTTCCTTCAATTCTTTAACAAACATTCTTGCAATAAAATTATCAAATGGCAAACAGCAATCAGTCAAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-175 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis.

Ensembl:

ensembl_id ENSDART00000140829

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042128 lncRNA upstream 898738 18560343 ~ 18596258 (+) False XLOC_020351
TCONS_00042127 lncRNA upstream 925608 18560343 ~ 18569388 (+) False XLOC_020351
TCONS_00042129 lncRNA upstream 925608 18565571 ~ 18569388 (+) True XLOC_020351
TCONS_00042126 lncRNA upstream 1190708 18254860 ~ 18304288 (+) False XLOC_020344
TCONS_00041895 lncRNA downstream 342768 19839275 ~ 19839592 (+) True XLOC_020382
TCONS_00042130 lncRNA downstream 515289 20011796 ~ 20050276 (+) True XLOC_020383
TCONS_00042131 lncRNA downstream 749965 20246472 ~ 20247476 (+) True XLOC_020390
TCONS_00042132 lncRNA downstream 751402 20247909 ~ 20259347 (+) True XLOC_020391
TCONS_00042133 lncRNA downstream 764724 20261231 ~ 20265527 (+) True XLOC_020392
TCONS_00040456 mRNA upstream 3268 19486719 ~ 19491728 (+) True XLOC_020373
TCONS_00040455 mRNA upstream 3664 19486711 ~ 19491332 (+) False XLOC_020373
TCONS_00040454 mRNA upstream 7764 19486711 ~ 19487232 (+) False XLOC_020373
TCONS_00040453 mRNA upstream 12819 19478140 ~ 19482177 (+) True XLOC_020372
TCONS_00040452 mRNA upstream 13194 19478140 ~ 19481802 (+) False XLOC_020372
TCONS_00040459 mRNA downstream 21103 19517610 ~ 19518662 (+) False XLOC_020375
TCONS_00040460 mRNA downstream 21688 19518195 ~ 19518789 (+) True XLOC_020375
TCONS_00040462 mRNA downstream 26475 19522982 ~ 19530681 (+) False XLOC_020376
TCONS_00040461 mRNA downstream 26475 19522982 ~ 19530681 (+) False XLOC_020376
TCONS_00040463 mRNA downstream 32344 19528851 ~ 19530019 (+) True XLOC_020376
TCONS_00040420 other upstream 256770 19237031 ~ 19238226 (+) True XLOC_020360
TCONS_00040385 other upstream 1214556 18247292 ~ 18280440 (+) False XLOC_020344
TCONS_00040386 other upstream 1214556 18253158 ~ 18280440 (+) False XLOC_020344
TCONS_00040387 other upstream 1240141 18254769 ~ 18254855 (+) False XLOC_020344
TCONS_00040381 other upstream 1319618 18166599 ~ 18175378 (+) False XLOC_020342
TCONS_00040469 other downstream 275191 19771698 ~ 19771812 (+) True XLOC_020380
TCONS_00040470 other downstream 296612 19793119 ~ 19793233 (+) True XLOC_020381
TCONS_00040472 other downstream 643018 20139525 ~ 20139592 (+) True XLOC_020385
TCONS_00040475 other downstream 655418 20151925 ~ 20151981 (+) True XLOC_020387
TCONS_00040488 other downstream 1597344 21093851 ~ 21093965 (+) True XLOC_020402