RNA id: TCONS_00040460


Basic Information

Item Value
RNA id TCONS_00040460
length 515
RNA type mRNA
GC content 0.38
exon number 2
gene id XLOC_020375
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 19517610 ~ 19518789 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgaataataaatgtgaTTTTGCATTACAGCTGAAAGTGAAACTAAACAACAATGTTGGAACAATATCATTACCAATGAATGGAGAAGATGTTAAAGCGGATACTCTCTGTAGTGTTGCTGGCTGGGGAAGTGTATGGAAACTTGGTCCAGCAACTGATCGTCTAATGGAAGCAAACACATTTATAGTAACTAATGCAAAGTGTGATTATAGATGGGGATTTAATTATGAGGCCTCACAGATGATCTGTGCACATGGTCATGGTGGATCCTGCCAGGGGGATTCAGGGGGACCTTTGGTTTGTGGAAACACTGCTGTTGGAATAACATCTTTTGGTAACCCTTTTCGCTGCAATTCATATTTGCTTCCTAATGTCTATACCAAGATTTCAGCATATCTTCCATGGATCCACAGTATTATAGACAATTGTGAGTGATTTATGGAAAATGTATAAAAGGTAGAAATGTTTTTCTTGAGTTCTTCCATGAACCAATAAAAGTATCACATGGCATTCAT

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-364 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis.

Ensembl:

ensembl_id ENSDART00000144453

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042128 lncRNA upstream 921937 18560343 ~ 18596258 (+) False XLOC_020351
TCONS_00042127 lncRNA upstream 948807 18560343 ~ 18569388 (+) False XLOC_020351
TCONS_00042129 lncRNA upstream 948807 18565571 ~ 18569388 (+) True XLOC_020351
TCONS_00042126 lncRNA upstream 1213907 18254860 ~ 18304288 (+) False XLOC_020344
TCONS_00041895 lncRNA downstream 320486 19839275 ~ 19839592 (+) True XLOC_020382
TCONS_00042130 lncRNA downstream 493007 20011796 ~ 20050276 (+) True XLOC_020383
TCONS_00042131 lncRNA downstream 727683 20246472 ~ 20247476 (+) True XLOC_020390
TCONS_00042132 lncRNA downstream 729120 20247909 ~ 20259347 (+) True XLOC_020391
TCONS_00042133 lncRNA downstream 742442 20261231 ~ 20265527 (+) True XLOC_020392
TCONS_00040457 mRNA upstream 21688 19494996 ~ 19496507 (+) False XLOC_020374
TCONS_00040458 mRNA upstream 22048 19495000 ~ 19496147 (+) True XLOC_020374
TCONS_00040456 mRNA upstream 26467 19486719 ~ 19491728 (+) True XLOC_020373
TCONS_00040455 mRNA upstream 26863 19486711 ~ 19491332 (+) False XLOC_020373
TCONS_00040454 mRNA upstream 30963 19486711 ~ 19487232 (+) False XLOC_020373
TCONS_00040462 mRNA downstream 4193 19522982 ~ 19530681 (+) False XLOC_020376
TCONS_00040461 mRNA downstream 4193 19522982 ~ 19530681 (+) False XLOC_020376
TCONS_00040463 mRNA downstream 10062 19528851 ~ 19530019 (+) True XLOC_020376
TCONS_00040464 mRNA downstream 19837 19538626 ~ 19543805 (+) True XLOC_020377
TCONS_00040465 mRNA downstream 34198 19552987 ~ 19562455 (+) False XLOC_020378
TCONS_00040420 other upstream 279969 19237031 ~ 19238226 (+) True XLOC_020360
TCONS_00040385 other upstream 1237755 18247292 ~ 18280440 (+) False XLOC_020344
TCONS_00040386 other upstream 1237755 18253158 ~ 18280440 (+) False XLOC_020344
TCONS_00040387 other upstream 1263340 18254769 ~ 18254855 (+) False XLOC_020344
TCONS_00040381 other upstream 1342817 18166599 ~ 18175378 (+) False XLOC_020342
TCONS_00040469 other downstream 252909 19771698 ~ 19771812 (+) True XLOC_020380
TCONS_00040470 other downstream 274330 19793119 ~ 19793233 (+) True XLOC_020381
TCONS_00040472 other downstream 620736 20139525 ~ 20139592 (+) True XLOC_020385
TCONS_00040475 other downstream 633136 20151925 ~ 20151981 (+) True XLOC_020387
TCONS_00040488 other downstream 1575062 21093851 ~ 21093965 (+) True XLOC_020402