RNA id: TCONS_00040462


Basic Information

Item Value
RNA id TCONS_00040462
length 1983
RNA type mRNA
GC content 0.38
exon number 4
gene id XLOC_020376
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 19522982 ~ 19530681 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTTACataagctaagctaatagtgctcACACCAGACCACAATatcagttgtgtttaaaaaatggtTAGACTCGACTGTTTAACTCTTgggaagttgtaaaatgagctCATTTAAGTGGAGTGTTCTTTAATTTAGGAGTCCTAAACTGCAGTGGCCAAGCAAAACTGAAGAGAGCAGAGTCATACCGTACTGCAAAATGGAAAAAGCAGCATTGGTGTGTGGTCTTGGTGACTGAGTCAGATTCATTAAGCTACCAGAAATGACAAGAAATATCAGCCAATAATTACATCAAACATAGAGAACATTAAGAACAAGCATAACACCAATCAAAAGCCACACCACGGTGTGAAAGAGGAAGTACATGAACTACCTAGGGTAAACTTGCCCACTTTACTTTACACACCAACCATCAAACCAGAGAAGAACATCAATAATCCGTAGCAACCTTCTAACACCAGCATCATGATCTTCTCTGTGCTTTTGCTAGTTTATCTGCTACCGAATCTGACCCTTCAAGGTaagtgtgataaaaaaataaataaaaaaaaatcgatGACCTTTAACCAATTATGTCTTCTACATTTAACGTAAATGTTAAACTTTAATGTTCACTATATTAAGAGACATTTGTCCAAGTCAGATTGATGTTTAACCAACCTAATTTGACTTTTCTCTTAGCATCTGTGAAGTCTGGCATAGTGAACGGGAAGGAAGCTAGACCTCATTCAAGACCCTACATGGTTTCTGTTCAATGCAATAAGAAACACATATGCGGTGGCTTCCTTGTGTCTGACCAGTTTGTCATGACGGCTGCCCACTGCTTTGTAAATGGCAAAGAGCTGACGGTTGTGGTTGGAGCTCATGAATACACTGATGGTGCTAGCCGCATGGATGTGAAGTTCTACCACATCCACCCTGGGTTTGAGTCTAAAACTCTGCTAAATGACATCATGCTACTTCAGCTACATAAAAAGGTCAAAAAGAGCAACAAAGTCAACTGGATCCCAATACCAAACGCAGACAAGGACATCAAGGCCAAGACTAAATGCAGTGTTGCAGGATGGGGGAAAAACACCACCCATGGTGAAGTAAGTGCCAAACTTATGGAGGTGAACGTCACTCTTTTTGACAAAAAAGCATGTCAGAAGTACTGGGGACCAACATACTCCACTTCAAAGATGATGTGCACAGGTGGTCATGGAGGATTTTGCCAGGGAGATTCCGGAGGACCTCTGGTGTGTGACAAAGTTGCAGTTGGAATTGTTTCATTCAATGAGAAAAACAACTGTGATTCCCCAACAATACCGAATGTCTACACCCAGATTTCCAAATTTCTGTCATGGATAAAATGCATTGTTGGTGGTGTGAAGGAAGAATttgaataataaacattttttctaaCATAAACATACTTATGTTAGAATACTATATTCTAACACACTCTGTTGTTTGTACGTGTGGATTTCTGTTGATCATTTTATAATCTGAATGATTGATTTGAACATTAAATGCTTTTGAGTGGAAAGTTAGTTTCAACCCTTCTCAGCAAAGCGGGTTTCCTGTGGGGGCTCAGCTCATCAAATGTGGTCAAACACCCTGTGAGAAAAAATAGTTTGCaagacatcttaaaaaaaaaaagatgacgaAGCAAGATTATGAGACGCATTCTATTATTACTGTAAGAAACGCAAAATGTCTATTCTTGCAGCAGAGAAGCAAATCAAGCAATACATATTGCCAGAATAAGAAGTCAACTTAAagttatagttcacccaaaaatgataatgTTCTCActattactcaccctcaaatggttccaaaccattatgagtaaagaagtaaagacactaaagaagatattctaaaaaaaaattttttttttaatttttaaaaaaagctgaaaacctgtaaccagttGAGtaattgacagaattttcagttttaggagaactgtccctttaaaatataaaaggattaaaat

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-459 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis.

Ensembl:

ensembl_id ENSDART00000192428

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042128 lncRNA upstream 926724 18560343 ~ 18596258 (+) False XLOC_020351
TCONS_00042127 lncRNA upstream 953594 18560343 ~ 18569388 (+) False XLOC_020351
TCONS_00042129 lncRNA upstream 953594 18565571 ~ 18569388 (+) True XLOC_020351
TCONS_00042126 lncRNA upstream 1218694 18254860 ~ 18304288 (+) False XLOC_020344
TCONS_00041895 lncRNA downstream 308594 19839275 ~ 19839592 (+) True XLOC_020382
TCONS_00042130 lncRNA downstream 481115 20011796 ~ 20050276 (+) True XLOC_020383
TCONS_00042131 lncRNA downstream 715791 20246472 ~ 20247476 (+) True XLOC_020390
TCONS_00042132 lncRNA downstream 717228 20247909 ~ 20259347 (+) True XLOC_020391
TCONS_00042133 lncRNA downstream 730550 20261231 ~ 20265527 (+) True XLOC_020392
TCONS_00040460 mRNA upstream 4193 19518195 ~ 19518789 (+) True XLOC_020375
TCONS_00040459 mRNA upstream 4320 19517610 ~ 19518662 (+) False XLOC_020375
TCONS_00040457 mRNA upstream 26475 19494996 ~ 19496507 (+) False XLOC_020374
TCONS_00040458 mRNA upstream 26835 19495000 ~ 19496147 (+) True XLOC_020374
TCONS_00040456 mRNA upstream 31254 19486719 ~ 19491728 (+) True XLOC_020373
TCONS_00040464 mRNA downstream 7945 19538626 ~ 19543805 (+) True XLOC_020377
TCONS_00040465 mRNA downstream 22306 19552987 ~ 19562455 (+) False XLOC_020378
TCONS_00040466 mRNA downstream 22709 19553390 ~ 19562455 (+) True XLOC_020378
TCONS_00040467 mRNA downstream 109628 19640309 ~ 19646420 (+) False XLOC_020379
TCONS_00040468 mRNA downstream 109628 19640309 ~ 19646421 (+) True XLOC_020379
TCONS_00040420 other upstream 284756 19237031 ~ 19238226 (+) True XLOC_020360
TCONS_00040385 other upstream 1242542 18247292 ~ 18280440 (+) False XLOC_020344
TCONS_00040386 other upstream 1242542 18253158 ~ 18280440 (+) False XLOC_020344
TCONS_00040387 other upstream 1268127 18254769 ~ 18254855 (+) False XLOC_020344
TCONS_00040381 other upstream 1347604 18166599 ~ 18175378 (+) False XLOC_020342
TCONS_00040469 other downstream 241017 19771698 ~ 19771812 (+) True XLOC_020380
TCONS_00040470 other downstream 262438 19793119 ~ 19793233 (+) True XLOC_020381
TCONS_00040472 other downstream 608844 20139525 ~ 20139592 (+) True XLOC_020385
TCONS_00040475 other downstream 621244 20151925 ~ 20151981 (+) True XLOC_020387
TCONS_00040488 other downstream 1563170 21093851 ~ 21093965 (+) True XLOC_020402