RNA id: TCONS_00040467


Basic Information

Item Value
RNA id TCONS_00040467
length 2003
RNA type mRNA
GC content 0.48
exon number 4
gene id XLOC_020379
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 19640309 ~ 19646421 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAAAAAGTTGTGTGATTTCTCGCAGCCTCAACGCAGATGAGCAGCAGTTGGAGAACTGCAATCAAACTGAATGGATTGGCATGGGGAGAAGCGGCACTCTCAACCTGGCTAAGCGGCAGCTTTGGAACTGGTTTTATCTTGTAGTGGTTTCTATGTGCCTGTTACTCCGACCAGTGTGCTGCCAAGCATGTCGGATTCAGCGCTGTAATGCGGAGTACGTGGCCTCATTCTCACCCTCCGGTGGCTTGCAAGAGGAGGTGCATCCAGATGTGGACTACTGCATCGCTCTGAGGGCCTACTCCTTGTGTACGCGGCGTACAGCTCGTGCTTGTAGAGGGGACTTGGTGTACCATTCTGCTGTTTTCCGCATTAAAGAGCTCTTTGCACAGCACAACTGCTCCAGCGACGGCCCAACATCGTCGGCCAAAGCACCCAGCACTTCCAAGCCAACAGTGGTGGACGTTTGCAACTATGAAAGCAGGGTGCTCGCATCAGGCCCGGCGGCCCAACAGAAAAAGTATGGACATTGTGGATTATTCGGTGATCCTCACTTGCGGACTTTTCGGGATGAGTTTCAGACATGTAGGGTTGAGGGAGCCTGGCCGCTCATCCACAACAGATACCTTTCAGTTCAAGTCACAAACGTACCAGTGGTTGAAGGCTCCAGTGCTACTGCAACCAACAAGATAACCGTCATCTTCAAGTCCTACCATGACTGCACCGAGCAGAAGGTGTACCAGGCCACCACAGAGGACCTGCCGTCAGCGTTCCAGGACGGCACGCGGAGCGGGGGGAAAGGGGAGAGCTTGTGGATTGTGGAGGGTAGTGGAGGTTTGGGCATACGGCAAGTCGGGCGGTACCTGACGTTTGCCATCCGCATGCCTGAGGACTTAGCAGAGGAGAACGGCGGCCTGCAGTTGTGCCTTCACGGCTGCCCGCGCAGTGAGGTCATCAAAGCCCATGTGCTCAACCGGCAGCAGAGTTTGCGTCCACCCCGACTCATGGGGGGCTGGTACGGAGAGGACGATGGCGGAGAGGTGAAATCAGGCCTCTCTTCGCACATAGACATGCTAGAACGTGCCACCACAAAGTGTCGAGAGATGCTCCAGGTGGAGGACGTTTATTTCCAATCGTGCGTCTTTGATCTTCTCACGACAGGTGATCCGGAGTTCTCCATGGCAGCGTATGGCGCCCTGGAAGACCTTAAGGCACTTCCACCAAGCACTCTTAAACAAAGTTCACCCAGGACTCCACCTGTTTCTAATAGGGGAACAATAGTTACACCTTCGGTTTTCACAGCTCTGGTTCTTCTGCTGTTGTTGAACTGAAGGAGATGGTCTAGACACCAGCTTGACGATGGCAACAGGAAAAACAATCAAACTGGCTTTGAACTGTCAAGGGATGGATCCGAACGGACTCGCTTTCTGTTAAACACGCAATGTTTTACGCCACAAAATGGATAATGGCACTTCAAGCTTTTCTGAATGTGAAATCTGCATGAGATGAAGGCAGCTAACCTGCATATCTTTTTAAATGATCGCATATAAAGAGTGGAGACTGTTGACGCAGATGTGACACCATTGGATGAAATCATTGTAAAAGACACGTAGCATGTCCTGTGATGCACATCTTACAGAATCAcccacatacaaatatatatgtcATCTACATGGGATCCAACAACTACATAAAAAGCTACCTATGCATATATTTTTGGTTCTGGTTCCATACATCTAAAGCTACAGTCACGGTAGAAAACAACCTCTTCAAGCTGCTTATcgacagaaaacaaaacaaattctttatataataatatattgagAGAGTGTATATATGTGTTTTATATGTGTACATTCACCTGTGTATAGATGATGATGTTTTAAATGTGACATTTTGAAGCCGTTTCATCTAGTTAGatatttttgtagtttgtatAAAACATAACTAATATGTGCTGTATGGTGTAATCTGTTATTTCCCATATTAAAAATGAGTTGTTACT

Function

GO:

id name namespace
GO:0030509 BMP signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0015026 coreceptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-561 Predicted to enable coreceptor activity. Predicted to be involved in BMP signaling pathway. Predicted to be located in membrane. Predicted to be anchored component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including anterior neural keel; axial chorda mesoderm; central nervous system; musculature system; and pharyngeal arch.

Ensembl:

ensembl_id ENSDART00000061725

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042128 lncRNA upstream 1044051 18560343 ~ 18596258 (+) False XLOC_020351
TCONS_00042127 lncRNA upstream 1070921 18560343 ~ 18569388 (+) False XLOC_020351
TCONS_00042129 lncRNA upstream 1070921 18565571 ~ 18569388 (+) True XLOC_020351
TCONS_00042126 lncRNA upstream 1336021 18254860 ~ 18304288 (+) False XLOC_020344
TCONS_00041895 lncRNA downstream 192855 19839275 ~ 19839592 (+) True XLOC_020382
TCONS_00042130 lncRNA downstream 365376 20011796 ~ 20050276 (+) True XLOC_020383
TCONS_00042131 lncRNA downstream 600052 20246472 ~ 20247476 (+) True XLOC_020390
TCONS_00042132 lncRNA downstream 601489 20247909 ~ 20259347 (+) True XLOC_020391
TCONS_00042133 lncRNA downstream 614811 20261231 ~ 20265527 (+) True XLOC_020392
TCONS_00040465 mRNA upstream 77854 19552987 ~ 19562455 (+) False XLOC_020378
TCONS_00040466 mRNA upstream 77854 19553390 ~ 19562455 (+) True XLOC_020378
TCONS_00040464 mRNA upstream 96504 19538626 ~ 19543805 (+) True XLOC_020377
TCONS_00040462 mRNA upstream 109628 19522982 ~ 19530681 (+) False XLOC_020376
TCONS_00040461 mRNA upstream 109628 19522982 ~ 19530681 (+) False XLOC_020376
TCONS_00040471 mRNA downstream 489023 20135443 ~ 20143425 (+) False XLOC_020384
TCONS_00040473 mRNA downstream 495108 20141528 ~ 20142205 (+) True XLOC_020384
TCONS_00040474 mRNA downstream 498616 20145036 ~ 20155026 (+) True XLOC_020386
TCONS_00040476 mRNA downstream 522932 20169352 ~ 20176716 (+) False XLOC_020388
TCONS_00040477 mRNA downstream 522939 20169359 ~ 20178417 (+) False XLOC_020388
TCONS_00040420 other upstream 402083 19237031 ~ 19238226 (+) True XLOC_020360
TCONS_00040385 other upstream 1359869 18247292 ~ 18280440 (+) False XLOC_020344
TCONS_00040386 other upstream 1359869 18253158 ~ 18280440 (+) False XLOC_020344
TCONS_00040387 other upstream 1385454 18254769 ~ 18254855 (+) False XLOC_020344
TCONS_00040381 other upstream 1464931 18166599 ~ 18175378 (+) False XLOC_020342
TCONS_00040469 other downstream 125278 19771698 ~ 19771812 (+) True XLOC_020380
TCONS_00040470 other downstream 146699 19793119 ~ 19793233 (+) True XLOC_020381
TCONS_00040472 other downstream 493105 20139525 ~ 20139592 (+) True XLOC_020385
TCONS_00040475 other downstream 505505 20151925 ~ 20151981 (+) True XLOC_020387
TCONS_00040488 other downstream 1447431 21093851 ~ 21093965 (+) True XLOC_020402

Expression Profile

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