RNA id: XM_021624703.2


Basic Information

Item Value
RNA id XM_021624703.2
length 3777
RNA type mRNA
GC content 0.51
exon number 15
gene id LOC110538105
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 67824802 ~ 67856022 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGGATTGGAGCGATTTAACCGCAGTACAGCCGGTCCGAGACTCCTAGTCAGGGTTTATAAATATGCCTCCCCTCTGGTGTGTATAGCTATAGACTGCAGACTGAATTGGAGCACAGAGGACCAGGTGGCGGTTTCACTGAGACAGGATTTATCTTAGCCCAGTAGCAGAAGCCCCTGCGCTGCGCCAGGGCCAGGGATTTAACAGCAGACAAAGAAACCCTCCTGGATGACTTCATGTTGACACACCCCATCTTCCTGGCCTCAGACAGGTTCCAGCAGGTCCTACTCCAGCAATTCGGTGTGGAGGGGAAGGCAGGGGAGGGCTGGCCCAGCTGGGACGGAGCAGAGAGGAAGCAGGCTGTGCTGAGTGTTGCTTTCCGCTACCTGGACACATACAGAGAACTGCTGCAGGAAGAGGGCGAGAGGTCCAACAGCTTCCCCAAGGAGCTATATTTGTGTGCAGTCCAACAACTCAGTCAGTTCCCTGAGCTCGTGGAAGACGTGCTGAAGCTTCAGCGCTGGACCGAGATCCTCCAATGCCCCAGCTCCGAGGAGGACAAGGAGATTCGGAAGAAGCAGGTGCGTCCTCTTTTCCGCCACTTCCGCCGCATCGACGCCTGTCTGCAGCCCAGAGAGGCCTTCCGGGGATCAGACGAGATCTTTTGCAGGGTGTACACGCCGGACCACTCGTACGTGACGATCCGCAGCCGTCTGTCGTGCCGCGTGGGGGAGATCCTGGCGCTGGTCAGGGAGAAGCTGCAGTACAGCGAAGACCAGCCAACCCAACCTGGCAACCTGCTGCTGGTGGCTGTCACCTCCGCTGGGGaGAAGGCCGCTTTCCGGCCTAGCGACGAGGCCGTCTTCACCACCCTGGGAGTCAACACTCACCTGTTTGCCTGCGAGCCCTCCGAGCTGGAGAGCCTGCTTCCCTTACCTGAGGAGATCCACTGGTCGCCCGGCGACAGTAAACTACATGACATGAGTGCTGAGGAGGTAGCCACTCAGCTGGTGGTGTTTGACTGGGAGCTCTTCAGCTGCGTGCATGAGGTGGAGTTTGTGTGCTACGTGTTCCACGGCGAGCAGGCTCGCTGGCGCCCCCTCAACCTTGAGCTGGTACTGCAGCGATGCAGCGAGGTGCAGCATTGGGTCGCCACCGAGATCCTGCAGTGCCAGTCGCTGCCCAAGAGGGTGCAGCTCCTCCGCAAGTTCATCAAGATCGCAGCTCTGTGTAAGCAGCAGCAGGACCTGCTGTCCTTCCTAGCTGTGGTCCTGGGGCTGGACAACCCTGCAGTCAGCCGCCTTCGCCTCACCTgggagGGCCTCCCTGGGAAGTTCAGGAAGCAGTTCCAGCAGTTTGAGAGCATTGCGGATCCATCCAGGAACCACAAGTCCTACAGAGACCTGATGGGCAGCCTCCGACCCCCCCTCATCCCCTTCACACCACTGCTGCTcaaagATCTGACCTTCCTCCACGAGAGTTGCAAGTCGTTTCATGGGGAGCTTGTCAATTTTGAGAAGATGCATAAAGTTGCGGAGATGGTGAGGAGCATCAGACGATACAGGAGCTCTCAACTGGCTCTGGATGCAGAGCCTtccccctctcacctccagaCCAAGGCCTACGTTCGCCAGCTGCAGGTCATCGACAATCAGAACCTGCTCTTTGAAATGTCCTGCAAGCTAGAGCCCAAAGACATGTGAGAGAAAGTGCGAATGAGTGGGAGAGGGACGAGAAAGGGGGAGATTGCCCCCATACCCACCTTTACCCCCTTTCTCCATTGCAACTCTGCCCTCAATGGTCTCAACCCTGATTGGCTGAATCAGCTAGCCATTTTTGTAACCTTGCTATGCTGGGTGTTTTCCTGGCTTCCTCCAGCCTCCTTCCTGGTCTGCTTGTCACGAGCCACTGCTGATTTTGTGTATAATACTCAGACTGCTGGAAACGGCTGAGAAAAATGACTGGAACTATTTTCTTTGAAGCCTTGTGCGTTTGACTTTGTGAGCATGTTGTGTGAGGAGGGCACAAGGTTTCAGGACTGACTCGACTAGCAGATTGGACAGCCATTTTGTACAGAAAATGAGGAGGAATGAATAGTAAACTtttgtttgatttgtttttgtttcCCCAACACCAAGTCATGCTTCTGCTTTCACGTCCAAGTGAAGCCTGTCCAGTTTGCACTGCCACCAAACCCCCTTCCCCAACAGGACCTTTCTGAACTTAACCAAACCAGGATGGTTAGCCCAAATGGGGAAAGGCCGGCTTTGTTTAACTAGACCTGATGAACTGAAGTCTGACATTTGACCCCCAGACAGACTGTGTTCCTGCTGTTGTCCCACCTTTTCTCTTTGAAGTACTCAGACGTGAGACAATCTAACCCCGTGACCTCTATCCTAACTCTTGACCCCTCCCCTCCAGCCAATATGGGCACTTACCACCGACAGCTCAGCGGCAGCCCTCAACGAGTCAGCGACAGTTGGATAATAGAAAATATACTCCTATGCTAGTTCATACTAGTACTTCTGGGCTAAAATAAACCCAGAGTTTATACCTCTGAACAAAAGCCTCCACCGTGTCACAAGAAGACGTGGTATTTCGGGTGATGGTGGAATGAAAAGTCTCTGAACCCCATGATGTGCTGCAGTCTTATTGGTTCCCCACGTCAAAGATCTCTCTCATTGGTTGAGTCAGTTGTTGATTGACAGCTCTTGATAATTCCACCCTTTTGGGGGGTTCAGACTGAGGCCGCAGGTTCACCATCACAAGACAAACCCTTCTTTATGTACAGATGATGGGAGGCCAACAAAATTTGTAACAACAAAGCACTTTTGCCTGACCTCAGGGCACATTTTCAGCATGAGAATTGTTTGTGATTGTATAAAAtgttcagtatagttcagttcaaTATCATTTTTATCGCAATTTAACAAAGCCATTGTCGCAGAACTCTCAACAAAAGAACCACGGCCCGTTTTATTCTATAGGCATGGTACCATCATCATGGCCACTTGTACTGCACCATAGTTTCTAATATGCTGATTGATGAATTGTCTCATAGAAAGTATATGGAGTTGAACAACTGGACCCAGTGACGTTGACGCCACTTGTTTGCCTGCAACTCTCTCAGGATCCCTGGGTCGCGACCTTCGCGGAGGGCTGCCTGGCAATGCCTGTAcgataaagctgtaatgtaaatATTCTATGTGTAAATAGCTAAATAATATGGAGACTCTATTTTGTGTAAAATGCAAGGAGATTATTTAATTTGTTTTGTAAATCTGAGAACGGGTGTAAATGGAGACAGAAATGGAGTCTGCTACTGTAGTTGAGATGAATTATACAGCATATTTCTTCtgttttatgttttgtttttcttaAGTGACTGGGAGgcctggggtggggggggggatcttGACTCGTGTGGggttttgtttttgtacagaAGTCCAGTGTTTACAGTCATCTCTCCTGAAACTCAGATGTGTCATTAGACGTAGCCCAAGGTTATATCCAAGCAGTTGTATCAAATCAACCCTTAACCCCGAGGCAATGTGTAGGTCTGGGAGATTTGGATAGGTGGTAAGGTAGTAAGACCTCCCCTTTGCCTTGTGATAGGCTAGATGGAAGTATCACTATATTGCTTGCACCTCTCACTTGTTTAGGAGGTAGGGGCTAAGGGTTTGGGAGTCGATCTGCTCTTTTTTACCATGGGGAGGAGGCCCTTCACTCTGGTCTCGGATACTACGCACCTAAATAAAGCCTCTTCTGATGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1254572 lncRNA upstream 64360 67774351 ~ 67774559 (+) True G1103334
TU1254571 lncRNA upstream 65062 67773499 ~ 67773857 (+) True G1103333
TU1254569 lncRNA upstream 67144 67771566 ~ 67771775 (+) True G1103331
TU1254545 lncRNA upstream 79767 67758917 ~ 67759152 (+) True G1103312
TU1254388 lncRNA upstream 151623 67676583 ~ 67687296 (+) True G1103172
TU1254623 lncRNA downstream 17759 67873781 ~ 67877996 (+) True G1103378
TU1254661 lncRNA downstream 87030 67943052 ~ 67943254 (+) True G1103415
TU1254667 lncRNA downstream 131672 67987694 ~ 67990015 (+) False G1103416
TU1254668 lncRNA downstream 131672 67987694 ~ 67990015 (+) False G1103416
TU1254670 lncRNA downstream 131672 67987694 ~ 68048717 (+) False G1103416
XM_021624695.2 mRNA upstream 28848 67793428 ~ 67810071 (+) False LOC110538103
XM_021624696.2 mRNA upstream 45830 67785697 ~ 67793089 (+) False LOC110538104
XM_021624697.2 mRNA upstream 45830 67785750 ~ 67793089 (+) True LOC110538104
XM_021624693.2 mRNA upstream 81121 67752698 ~ 67757798 (+) False LOC110538101
XM_021625915.2 mRNA downstream 174663 68030685 ~ 68033321 (+) True LOC110538947
XM_021624707.2 mRNA downstream 177415 68033437 ~ 68037843 (+) True LOC110538109
XM_021624709.2 mRNA downstream 194283 68050305 ~ 68052859 (+) True LOC110538110
XM_021624711.2 mRNA downstream 201603 68057625 ~ 68062260 (+) True LOC110538112
XM_036938143.1 mRNA downstream 209970 68065992 ~ 68070572 (+) False LOC110538113
TU1254582 other upstream 28856 67805349 ~ 67810063 (+) True LOC110538103
TU1253246 other upstream 613120 67225352 ~ 67225799 (+) True G1102115
TU1253139 other upstream 779512 67058735 ~ 67059407 (+) False G1102021
TU1253140 other upstream 779603 67058735 ~ 67059316 (+) False G1102021
TU1252914 other upstream 1067528 66724661 ~ 66771391 (+) False G1101805
TU1254663 other downstream 131672 67987694 ~ 68008477 (+) False G1103416
TU1255479 other downstream 648019 68504041 ~ 68505295 (+) False G1104149
TU1255480 other downstream 648019 68504041 ~ 68505295 (+) True G1104149
TU1255496 other downstream 672259 68528281 ~ 68531861 (+) True G1104162
TU1256153 other downstream 1459710 69315732 ~ 69317648 (+) True LOC110538155

Expression Profile