RNA id: TCONS_00041895



Basic Information


Item Value
RNA id TCONS_00041895
length 318
lncRNA type intronic
GC content 0.31
exon number 1
gene id XLOC_020382
representative True

Chromosome Information


Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 19839275 ~ 19839592 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


GTTTCAGTGTATAATGAAAAGCTACTAAACTGAATTAACATTTTGCTCTTGCATTTTTCGTCTCTATAAGTGTTCACAAAATGCATGTTGCTCatcaaaaaagatttaaaacaacTATTAAATTACAACTGATgactaataaattaattattcacccCAAAAGTAAATGTCTATCATTATTTATTACTGAGTCTCATGCTCTTCTGTAATCCCATGACTTTTTTTTCCCATGAGTTTTTCCCTCAGTAGTTTATGTTCCTTCCAGAACACCATTccctgcattcatttattcatccagaAAGGAGACAGATAAAACAC

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00042128 lncRNA upstream 1243017 18560343 ~ 18596258 (+) False XLOC_020351
TCONS_00042127 lncRNA upstream 1269887 18560343 ~ 18569388 (+) False XLOC_020351
TCONS_00042129 lncRNA upstream 1269887 18565571 ~ 18569388 (+) True XLOC_020351
TCONS_00042123 lncRNA upstream 1534987 18253157 ~ 18304288 (+) False XLOC_020344
TCONS_00042130 lncRNA downstream 172204 20011796 ~ 20050276 (+) True XLOC_020383
TCONS_00042131 lncRNA downstream 406880 20246472 ~ 20247476 (+) True XLOC_020390
TCONS_00042132 lncRNA downstream 408317 20247909 ~ 20259347 (+) True XLOC_020391
TCONS_00042133 lncRNA downstream 421639 20261231 ~ 20265527 (+) True XLOC_020392
TCONS_00042134 lncRNA downstream 473211 20312803 ~ 20332834 (+) False XLOC_020393
TCONS_00040468 mRNA upstream 192854 19640309 ~ 19646421 (+) True XLOC_020379
TCONS_00040467 mRNA upstream 192855 19640309 ~ 19646420 (+) False XLOC_020379
TCONS_00040465 mRNA upstream 276820 19552987 ~ 19562455 (+) False XLOC_020378
TCONS_00040466 mRNA upstream 276820 19553390 ~ 19562455 (+) True XLOC_020378
TCONS_00040464 mRNA upstream 295470 19538626 ~ 19543805 (+) True XLOC_020377
TCONS_00040471 mRNA downstream 295851 20135443 ~ 20143425 (+) False XLOC_020384
TCONS_00040473 mRNA downstream 301936 20141528 ~ 20142205 (+) True XLOC_020384
TCONS_00040474 mRNA downstream 305444 20145036 ~ 20155026 (+) True XLOC_020386
TCONS_00040476 mRNA downstream 329760 20169352 ~ 20176716 (+) False XLOC_020388
TCONS_00040477 mRNA downstream 329767 20169359 ~ 20178417 (+) False XLOC_020388
TCONS_00040470 other upstream 46042 19793119 ~ 19793233 (+) True XLOC_020381
TCONS_00040469 other upstream 67463 19771698 ~ 19771812 (+) True XLOC_020380
TCONS_00040420 other upstream 601049 19237031 ~ 19238226 (+) True XLOC_020360
TCONS_00040385 other upstream 1558835 18247292 ~ 18280440 (+) False XLOC_020344
TCONS_00040386 other upstream 1558835 18253158 ~ 18280440 (+) False XLOC_020344
TCONS_00040472 other downstream 299933 20139525 ~ 20139592 (+) True XLOC_020385
TCONS_00040475 other downstream 312333 20151925 ~ 20151981 (+) True XLOC_020387
TCONS_00040488 other downstream 1254259 21093851 ~ 21093965 (+) True XLOC_020402
TCONS_00040522 other downstream 2726582 22566174 ~ 22588719 (+) True XLOC_020427
TCONS_00040524 other downstream 3000966 22840558 ~ 22840675 (+) True XLOC_020429