RNA id: XM_021624707.2


Basic Information

Item Value
RNA id XM_021624707.2
length 4199
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC110538109
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 68033437 ~ 68037843 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAAGCCCCAACGTCATGGCTAGTGTCACGTCTCACTGTGCAATGAGCAATGGAACTGCCTTCCAACACGTCTTCATGCCAATTCAGAGTTCCTCCATTAGTGTACCAAGAGCAAGTGTACCAATAATTTGTATACCAAGAGCAAGCGTGTCAAGTATTAGTGAGACCTCAAGAGAGACCTCAAGCAATTTAGAAGACGGAGGACAAGTGGTAGGTGCAGCCATTGGGGAGCAGGTTACCCGTGTGCAGAAAGTGTTTCTGTATAATGCCTCCGATAAAACAGTGCAGAGTGTACAAACTTCCAATCAGGTTAGCACTGTAAAAGAAGTCCAAAGCAAGTGTTTAGAAAGTGGGCATCGGGTTGGATATTCAGAGAGCAGCGCTAACACCAGCTCTGCACAACATGGAGCTAGCGCTAACACCAGCTCTGCACAACATGGAGCTAGCACTAACACCAGCTCTGCACAACATGGAGCGAGCGCTAAAACCAGCTCTGCACAACATGGAGCTAGCGCTAACACCAGCTCTGCACAACATGGAGCTAGCGCTAACACCAGCTCTGCACAACATGGAGCTAGCACTAACACTAGCTCTGCACAACATGGAGCTAGCGTTAACACCAGCTCTGCACAACATGGAGCTAGCGCTAACACCAGCTCTGCACAACATGGAGCTAGCGCTAACACCAGCTCTGCACAACATGGAGCTAGCGTTAACACCAGCTCTGCACAACATGGAGCTAGCGCTAACACCAGCTCTGCACAACAAGGAGCTCACATTGTGAGTAGCGTTGAGAATAAAACCACCACTGTCAGTAGAGTCAATGACAGACCACTTGATAATATCAGTGTGATTATCTCAACAGCTCAGATTAGCGAAGATGCATCTCAGATTAAAGACACAGAAGTTGTTCAGATCACTAGTAGTGATGTTGATGTTACCAATGTTAACTGTGGAGGACAGACTGCTAGCAACGTGAATGAAGAAGAGATAAGCATTGCCGATGACACAGTACAAGTTAGCAGTGAGGAGGCCGTAGTGGTGGTTGGTGTCAGGGATGTAAAAAGCACAGGTCAGATAAAATGTAGGGAAACTGAGATCCAGGAGAGAAGTGTGGAAAGTGAGACTAACATTGGCAGTGAAAATCAGATTGTTAGTACTGTGCATGATGCTCGAATGATCTCTGCAGAGGAAGAAAACCAATTCAGAAGTGAGGAGACTCAGATTGACAGCATGGAGGTTAGGAGTCAGATGAATAGCTGTCAAATTGAAACTCAGATCAGTGGAGTTCTGAGTGTTTCGGAAATTGTTGCTCAGATAACCCGTGTAGGAAATGGCAGTCAGATCAGCTGTGTTGAAACTGGAGCACAGCTCTGCTCCTTGGAGATAAACATCACAGAAAATGAGGTTCAGCCAAGCAGTCAGCCAACAGAAGTAAATATCACCCAATCGGAAGACAGATTTGAGATGATAAATGCTGAACATGGAGAGCATGTTATTATAGAGGAAACTATCATTGAGGAGACAAGCTGTATATCCAGAAAGAGTGACACTGTGGAGAGCAGCAGGGTTGAAAGCGTAGGACCGGTTGATAAGCTGGAAGTCACAGCTGTAGTTGGTGATGCAGACGACGAAGGTCAAACAAACTGTGAGGAGAGTAGAGGTCAGATAAACATTGCTCAGGGTGGTGACCTGACGAGCACAATCATAACAACAAGTGTGGTTGAAATGAAGAGTGCTGATGAGGCTGATGACCTGACAAGAAGTGTGGTTGAGATGATCAGCACAGAAATATCAATGGCATCCAGCGCTGAATTTGAGGTTCCAATTGTCCACAGGGAGTACAGAGCTCAAACCCCCTTGATGGAGAGTGAAGGTATGATTAGCAGAGATGTTCAAATGATTGACCATGTCTCTACAGGTGACATAAGCACTGTGGAAACTGTAGTAGTCTCGTTCCCATCCGTGTCTCAGACAACTGACAGCGATAATGCTAGCAGCATGGGATGCGAGGCTAAGGAAACTGTGATCCAGGTGAAGAAAGTGGAAGGTCCAGTTCCAAACAGCAGTGCAGAACATCGGGGTATGATCACCAATGTTGTACAGATTAGCAGCGCTGCAAGTGACAATACGATCAGCAGTGCCACCGGTGAAGTGGTAAAAGTGCCAGCTAGCACAGTGGCAAGTGCAGTGGAGATCATCAGTGATATGAGAAGTGGAAGTATGATAAGTACTGGAGGTATGACTAGTGTAGGCAGTGGTGGTTTGATCAGCAGGACAGAAAGTGGCTATATGATGAATAATGTGGTAAGTGGACAGATGATATCTAGTGCAGGAAGTAGACACATGGTAACTAGTGCAGGAAGTGGACACATGATAACTAGTGCAGGAAGTGGACAGATGATAACTAGTGCAGGAAGTGGACACATGATAACTAGTGCAGGAAGTGGACACATGTTAACTAGTGCAAGTAGTGGAGGAAGTGGAGAATGGTTGGTTTATGGTGGAGGTACAGGCAGACTCAGTGGTCCAGGTAGTGGAGGCAGACTCAGTGGTCCAGGTAGTGGAGGCAGACTCAGTGGTCCAGGTAGTGGAGGCAGACTCAGTGGTCCAGGTAGTGGAGGCAGACTCAGTGGTCCAGGTAGTGGAGGCAGACTCAGTGGTCCAGGTAGTGGAGGCAGACTCAGTGGTCCAGGTAGTGGAGACAGACTCAGTGGTCCAGGTAGTGGAGGCAGACTCAGTGGTCCAGGTAGTGGAGACAGACTCAGTGGTCCAGGTAGTGGAGACAGACTCAGTGGTCCAGGTAATAGTAACGGCAGTGGAGTCTGGACCCATGTGAATTCCGAAAGTGCCTCTCAGTTTAacagaaacacgagcaatgaaagGACTGGTAGACTTAGCAGTGCAGGAAGTGGAGAATGGAAGGTTTATAGTAGAAGTAATGGACAGATCAGTAAGGCAGGAAGTGGGGGAAGAATCAGCAGTGCTGGAAGTGGACACATGATCAGCAGTGCTGGAGGTGGACACATGATCAGCAGTGCTGCAAGTGGAGGTAGACTGAGAAGCAGAAGCACAGGAAGTGGAGGTGGACTAAGTAGTGCAGGTAGTGGACATATGATCAGTAGTGCAGGAAGTAGAGGTAGACTGAGTAGCAGTAGCACAGGAAGTGGAGGTAGTGGACATATGATCAGTAGTGCAGGTACTAGTGGACAGAGAATTAGTAGTACAGAGGGTGGTGTCAGGATCAGCAGTGGGGGTAGTCGAGTGATTACCAGCAGTGGTGGTCCAGCCAGCGGCCCCAGCAGAGTGACCATCAGGAACACAGGAAGCGGAGGCGGTGGAGGCAGAGAGCGGATCAGCGTCTGTAAAATGGCTGCCCTCTCCATATCAGCTGCcgtgaaagaaagagaaaaggccCAGGAGGTCCGTCGGGAATCCTAAACAAAACGGGTGTCAGCCACCAGTCCTCAGGTCCAGCGGTGGGTGAGAACATCAGTGGAAGAAACTGTGGACAACAGTAAAACTGATGACAACAGTGTGCCATTCTGAGTGGACAGAGGAGCAAGGCATAATGACAAAATAGTCACACTACTTATAGTTAATAAATATCTATTACATTGCATTCCATCAAAGGAGCGTTAATACCTTTAAATGACCAGTATCACAATGCACCTTCATGttagaaaacatgttttcacaggATCTCTGTCTGCAATAATTCCTGTTACTGTGCCTTTCATCATTGCTGTGAATAAGTAATGCACTGAGTTTTCTGTTTGAACAGTAATCTATAAAGTTCTGAAATATACTCTGACATAGTTATAGGGACGCAGGGGTGATGCAATTTGTTCTACGCCAAACAATTTGATCTTAATGGATTCGGTTTCCTTGTAAAGAGCTTACACTTACATTTATCCAGAAGATGTCAGTATATGCATTTAGGTGATCAGTTGTGGAGCGAGTCAGCTAGTCATCTCATTTGACACATTTACGCAAGTTAGTATAACTTGTAGATTTTATTTTAGTAGTTTGAAGTCAATGTATCAAAGCTTAAATAAAGCTTCTGATGACTTATTACATTATATTGTTTTTAATGATGAAGAACATATTTTACTGTTATTACTTCACACTTATGAATACAATTGTTCTGAAATATTATTCTCATCTTATTTCGTTTTATTGTGATacacatttgaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1254671 lncRNA upstream 24960 67987694 ~ 68008477 (+) True G1103416
TU1254667 lncRNA upstream 43422 67987694 ~ 67990015 (+) False G1103416
TU1254668 lncRNA upstream 43422 67987694 ~ 67990015 (+) False G1103416
TU1254661 lncRNA upstream 90183 67943052 ~ 67943254 (+) True G1103415
TU1254623 lncRNA upstream 155441 67873781 ~ 67877996 (+) True G1103378
TU1255037 lncRNA downstream 109365 68147208 ~ 68147412 (+) True G1103752
TU1255047 lncRNA downstream 166205 68204048 ~ 68210597 (+) True G1103762
TU1255085 lncRNA downstream 173866 68211709 ~ 68212001 (+) True G1103800
TU1255113 lncRNA downstream 182313 68220156 ~ 68222116 (+) True G1103819
TU1255095 lncRNA downstream 198993 68236836 ~ 68266542 (+) False G1103801
XM_021625915.2 mRNA upstream 116 68030685 ~ 68033321 (+) True LOC110538947
XM_021624698.2 mRNA upstream 177415 67824802 ~ 67856022 (+) False LOC110538105
XM_021624699.2 mRNA upstream 177415 67824804 ~ 67856022 (+) False LOC110538105
XM_021624703.2 mRNA upstream 177415 67838919 ~ 67856022 (+) True LOC110538105
XM_021624695.2 mRNA upstream 223366 67793428 ~ 67810071 (+) False LOC110538103
XM_021624709.2 mRNA downstream 12462 68050305 ~ 68052859 (+) True LOC110538110
XM_021624711.2 mRNA downstream 19782 68057625 ~ 68062260 (+) True LOC110538112
XM_036938143.1 mRNA downstream 28149 68065992 ~ 68070572 (+) False LOC110538113
XM_036938144.1 mRNA downstream 28149 68065992 ~ 68070573 (+) False LOC110538113
XM_036938145.1 mRNA downstream 28149 68065992 ~ 68070573 (+) False LOC110538113
TU1254663 other upstream 24960 67987694 ~ 68008477 (+) False G1103416
TU1254582 other upstream 223374 67805349 ~ 67810063 (+) True LOC110538103
TU1253246 other upstream 807638 67225352 ~ 67225799 (+) True G1102115
TU1253139 other upstream 974030 67058735 ~ 67059407 (+) False G1102021
TU1255479 other downstream 466198 68504041 ~ 68505295 (+) False G1104149
TU1255480 other downstream 466198 68504041 ~ 68505295 (+) True G1104149
TU1255496 other downstream 490438 68528281 ~ 68531861 (+) True G1104162
TU1256153 other downstream 1277889 69315732 ~ 69317648 (+) True LOC110538155
TU1256295 other downstream 1785372 69823215 ~ 69855195 (+) True LOC110538173

Expression Profile