RNA id: XM_036938143.1


Basic Information

Item Value
RNA id XM_036938143.1
length 2360
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC110538113
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 68065992 ~ 68070573 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccggtaacggagcagtgcggtagcagacagaacagtctgtgactagggtggctggagtctttggcaattttttgggccttcctctgacagcgcctggtatagaagtcctggatggcaaaTTGATTAATGATTATGCTTCTCTGTACCGTAGCCTCTGAGTGCCATAGACAAAACACTGAGGATATATTCGTGACCACCATTGTACCATTACTTAAATAAAACGTCTTGTTTGTAGCCCATACCGTTAAAACTTTATGACTGTATTACCGTGGATTGACCGGACTGTATTTTACATCCAGTATATAAATCATGTCACAGTCGTTCTGAAACTACTTGCGGGACGCTAACTACTTATCACTCAAGGGAGTATTGCACAGAGCTGGAGGATTATTGTGAATTTACCTTTGGGGGACATTGGAGGCACTAAAGGGCACAAAAGGTGGACTGGTCTCAACTCACATTGTCGCTTAACCTGTCTATCAAGAAAAATATGTCCAGACTCACCCAGATACAGGACATCCCCCCAAGCCCTTAAGATAAGTAGCCTACTACCTGCACCAAACAATAGTACCTGTTTGGCCAAAGATGCAAGTCCTAAGAAAGTCATGATTTTATCATGAAACAGGTTAGAATTTAGATTCCACAGATTTTGTGTTGGCTCTCCTCCCTGCCCATACCTGATTAGTGAGCCTgttaatttgatttgttttcattaGCTTTTGGCTAAGGTTGGAGTGATTTCACCATATGTCATCTGGGTAGAGCCCCCTCGCCTCTCCCTCATTTCGTAGCATAAAAAGCCTGTGTCCAATGACTCTTCACTCACTCTTCTCTACTCAGACCAGACAGCAACTTCTGCCACCATGACCTCCTTCTCCAGCAACAGCTTCATGTCCTCTGCATCTATGGGCTCCTTTCGCCACATGTCCATGTCTAGTGGAGGTAGACACATCAGCGCCATGAGGGGCGGCAGCGTGTACGGGGGTGCCGGTGGGTCCGGGGTGCGCATCTCCAGTGCCTCCAGCACCTTCTCTGCTGGCAGTGAGTCTGGTGGCAGCTCCAACCTAGCCGACGCTGTCTACCTGAACGGAAATAAGAAGGCCACCATGCAGAATCTGAATGACCGCCTAGCCTCCTACCTGGACAAGGTCCGCTCCCTAGAGAAGGCCAATGCTGATCTGGAGGTGAAGATCCACCAGTCCCTGGAGAAAAAAGCCACACCTGAGGCTCATGACTGCACTGCCTTCAAAGTCGTCATCAGCAAACTCCAAAACCAGATCTTTGATGCCACTCATATGAATGGAGGATTCTACCTGGCTATTAACAATGCTAAGTTGGCAGCAGATGACTTTCAAGTCAAGTATGAGAATGAGCTGGCTATAACGCAATGTGTGGAGGCTGATATTGCTGGGCTGAGGCGGGTGAGGGACGACCTGACCATTGGAGGATCCAACCTGGAGATGGCGGTTGAGGAGCTGAAGGAGGAGTTGGTCCACCTCAAGAAGAACCACAAGGAGGAGGTCAAGGCCCTTCGGGCGCAGGTGGTTAATCAGACGGTCAACGTGGAGGTTGATGCTGCCCCACAGGAAGACCTCACCAAAGTCATGGCTGAGATCCGTGAGCACTACGATGCTGTTGCTGCCAAGAACCAAAAAGAACTGGAGAGCTGGTTCAATGCAAAGACAGAAGAAATTCAGAAAACTGTCGCCTGCAGCACAGAGACCGTCCAATCATCCCAATCTAAAATCACTGAAGTTAAACGCATAATGCAAAGTCTAGAAATCAAATTCCAATCTGAACGTAGCATGAAAGCATCCCTGGAGGGCACCCTGGCTGACACACAGAACCGCTATGCCAATATGCTATTGAGTTATCAGATGCAGGTGACCAGCTTAGAGGGCCATCTTGGTCAGATACGTGGTGACTTGGAGCGCCAGGGACAGGAATACCAGATTCTGCTGGACATCAAGACCAGGCTGGAGATGGAGATCACTGAGTACAGGAGACTGCTGGACGGAGAAATGACAAGCAGTGTCTCGACAGCCACCAAAACACACAAGGTGGTGACTATCATCATGGAAAGTGTTGACGGCAAGGTGATCAGTGAGACCAAGTGAGACATCTTAAAACGGGGAATTCACAGAACAGAACACGATTCCTACTGTCAACCTTTCTCAGAAGCTGTGTTTCAATTGGGTTGTGTAAACTTATCTCTTGGGATTTATATACTTCCTCTGATACCTTCAGAGAGATTTGTCAATAAAACTAAGCCCTAAAACTTTTGTTTCATTTTTGTTTTGATTTGACGGAATCATTTTATGAAATTTAAGCTATCGACAACATAGTTGAAGCAATCTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1254670 lncRNA upstream 17275 67987694 ~ 68048717 (+) False G1103416
TU1254671 lncRNA upstream 57515 67987694 ~ 68008477 (+) True G1103416
TU1254667 lncRNA upstream 75977 67987694 ~ 67990015 (+) False G1103416
TU1254668 lncRNA upstream 75977 67987694 ~ 67990015 (+) False G1103416
TU1254661 lncRNA upstream 122738 67943052 ~ 67943254 (+) True G1103415
TU1255037 lncRNA downstream 76636 68147208 ~ 68147412 (+) True G1103752
TU1255047 lncRNA downstream 133476 68204048 ~ 68210597 (+) True G1103762
TU1255085 lncRNA downstream 141137 68211709 ~ 68212001 (+) True G1103800
TU1255113 lncRNA downstream 149584 68220156 ~ 68222116 (+) True G1103819
TU1255095 lncRNA downstream 166264 68236836 ~ 68266542 (+) False G1103801
XM_021624711.2 mRNA upstream 3732 68057625 ~ 68062260 (+) True LOC110538112
XM_021624709.2 mRNA upstream 13133 68050305 ~ 68052859 (+) True LOC110538110
XM_021624707.2 mRNA upstream 28149 68033437 ~ 68037843 (+) True LOC110538109
XM_021625915.2 mRNA upstream 32671 68030685 ~ 68033321 (+) True LOC110538947
XM_021624699.2 mRNA upstream 209970 67824804 ~ 67856022 (+) False LOC110538105
XM_021624710.2 mRNA downstream 7018 68077590 ~ 68080169 (+) True LOC110538111
XM_036938148.1 mRNA downstream 71965 68142537 ~ 68145627 (+) False prf1.3
XM_021624717.2 mRNA downstream 71965 68142537 ~ 68146797 (+) True prf1.3
XM_036938149.1 mRNA downstream 80756 68151328 ~ 68203022 (+) True LOC110538117
XM_021624720.2 mRNA downstream 174083 68244655 ~ 68257464 (+) True LOC110538119
TU1254663 other upstream 57515 67987694 ~ 68008477 (+) False G1103416
TU1254582 other upstream 255929 67805349 ~ 67810063 (+) True LOC110538103
TU1253246 other upstream 840193 67225352 ~ 67225799 (+) True G1102115
TU1253139 other upstream 1006585 67058735 ~ 67059407 (+) False G1102021
TU1255479 other downstream 433469 68504041 ~ 68505295 (+) False G1104149
TU1255480 other downstream 433469 68504041 ~ 68505295 (+) True G1104149
TU1255496 other downstream 457709 68528281 ~ 68531861 (+) True G1104162
TU1256153 other downstream 1245160 69315732 ~ 69317648 (+) True LOC110538155
TU1256295 other downstream 1752643 69823215 ~ 69855195 (+) True LOC110538173

Expression Profile