RNA id: XM_021624717.2


Basic Information

Item Value
RNA id XM_021624717.2
length 2772
RNA type mRNA
GC content 0.49
exon number 4
gene id prf1.3
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 68142537 ~ 68146797 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCAAAATACCAACATCTCTGTGTAAGCACCTGCCATGCCTGTCAACCttctactcttcctcctcttcctccctgtgtGTCACGGCTGCCACACTGGCTCCTTCACCGACTGCCAGAAGGCTCCGTTCGTCCCCGGCCACAACCTGGCCGGAGAGGGTTTCGACATCGTCAAGATGCAGACCTCCGGCGCCTTTGTGGTGGATGTGCGGAAGTTCATGGTGGGTGGGCACGACGGTAACTGCACCCTGTGCACCAACACTCTGATGGGCGGCCAGGTCCAGAAGTTACCGCTCTCCGTACTGGACTGGCGCACAAAGGTGAAGTGTCGTCGGAGCCTCAGCAGCCAGATGTACGAGTCGAGCACCTCCGTTCTAAAGGAGACCGCTAACGCTGCCAGCGTCAGCTGGAAGGCTGGCCTGGGAATCCAGGGCATTGCTGGGGTTGCTGTTGGAGGCACACACTCCAAAACTGCCATGTTCGCCAGAGGCCACTCCACCAATGACAAGTTCTCTTTTACCAGCCATGAATTCAAATGCGAATATTACACCTTTCGCATCCGAACCCAACCCCCTCTGAGCCAGGAGTTTCAGGACTCCCTAAAAAACCTGCCCAGCACGTACACTCACAAGACCAACCCTGCCTACAGCCAGTTCATCTCCATCTATGGCACCCACTACATCCGCAACGTGCACCTGGGGGGGCGGGTGCACTCCACCACAGCCATACGCACCTGTAAGATGGCCATGAGCGGCCTCTCCCTCCATTCTGTCAGCAACTGTCTGGGGGTGGAAGCCAGTGGCACCATCAAAGGTGTCACGATCAGCGCCGAGACCAAGTACTGCAAGTCCCTGAGCAATAAACTGAAGACAGGCGTAAGCTTCGGAGCCACCTTCTCGGACCGCGTCACCGAAGTGCAGGGCGGCAACGTCGAGGTTGAGGACATCCTCTTCAGCCCTGACAAGAAGTCTGGCTATAAAACCTGGCTGAAGACCCTGAATAAGGTCCCTGGTGTGGTCTCCTACCAGCTCAGCTCCCTGCATTTCCTGGCCAGAGGCAACCCCATCCTTAAGGCCAACCTGCGCAATGCCATCAGAGACTACATCCAAAAGAACGCTGTGTCCACCTCCTGCCCTTCTGCTTGCAAGACAGGGAGACGCAACAAAGGCTGTGCCTGTATCTGTAGCGGTCACAGGAATGTGGACTCCAACTGCTGCCCCAGTAAACCGGGCGTGGCCAGGATGAATGTGACGGTGGTCCGAGCTACGGGGCTCTGGGGCGACTACTTCTCTAAGACAGACGGCTATGTCAAGGTCCTCTATGGAAAGCAAGGCGGTTCCACTCCTGTGATCTGGAACAATGACTTCCCCCACTGGAACTATAGGATTCAGTATGGAACAGTGGATTTGAAAAGTAAACAAACCTTGTACTTTGAGGTGTGGGACCGCGACAACAGATGGAACGATAACCTGCTAGGAAAGGGCTCCATAACCCCTCAAAGGGGCATGAACGTCAACCAAAGTTTCAAGTTGAAACACGGCACGCTTTATGTCTCCCTGTCTGTGGTCTGCGGCCCCAGCCTTAAAGGAGCCTTCTGTGATCAGTATGCCCCCTCACCTGGGTCCCAGGGTAGGCTGAGTTACGTCCATGACTgggacagagcgacagagacgtTACCCACCCTCTTCCAGGGTTCTCACAGTACCCGGAACAGGACCTTCCTGTGAACGGTGCCCCTCATGTTAATTTACTtacttaattataataatataataacatgtGCCATTtggcagatgcttttatccaaaagGACTTACAGTACGGTGCATATATTTTTAGAATATGTGACCCCAAGCGGAAATCAAACCGACAACCTCTAACCAATGCTCTTACCAGCTGAGCCTCATATGACTATTTTCTCCTCTTCACTCTCTGTGGAGCATAAGGCCGCAACAACACATGCCATGCCAGACGGTCCTTTGCCGTTTTCTCTCTGCTTCACCTTTGTGACATGAGGCTAATGGTaaatcagttttttttaaatgcattaaaTCGATAGGTCAACCAATTAGCTTGCGTTGACAAGCTTGGGTATTCCTTTCCACGGCGATAAAATGATTCATTGCTTCAGGGTTGCCTctacattcatatattttttcttTCTGTCACAAAACTAAATTATTTCTCAAAATTGAcctttttttgtgtattttttgtTGCACAATTCTATGTAATGTCTGATACATCCAAATAGTTGGGGTTTCAGTATTACTCGTATAACtgtgacacacaaaaaaaaaacgtattgaaAGTAATGTGAAAGGAGGGATTTTGGGTCTACTTGAGGCCTGCTTGAAGAGGAACATTACCCAAGTGCTTTTGCTGATTCATTACCACCACCCAGATGAAGTGGGTGAGACCACTGACTCTGGATGCGTcgcaaatggcatcctattccacTTCTAGTGCatgcctttgaccagggcccatagggctctggtcaaatgtagtgcactatatagggaatagggttccatttgggactccTCCTCTGCATTAGACCAATGTAACAGGAACATGACCACATTCCTCAATTGACATGACACTTGGCAATAGCTGAGAAAGCAAATGTGGCTTACATACAGTACGTCACTTACATTTAGTTTTCACTgtatttatcttttttttttatgtttatgttCCTTTCCTTTCACATTTGTTTGCATTTTCTATTTTCTGCTTGTACTGTCATTCAATAAACTGAGTAGACCTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1254670 lncRNA upstream 93820 67987694 ~ 68048717 (+) False G1103416
TU1254671 lncRNA upstream 134060 67987694 ~ 68008477 (+) True G1103416
TU1254667 lncRNA upstream 152522 67987694 ~ 67990015 (+) False G1103416
TU1254668 lncRNA upstream 152522 67987694 ~ 67990015 (+) False G1103416
TU1254661 lncRNA upstream 199283 67943052 ~ 67943254 (+) True G1103415
TU1255037 lncRNA downstream 411 68147208 ~ 68147412 (+) True G1103752
TU1255047 lncRNA downstream 57251 68204048 ~ 68210597 (+) True G1103762
TU1255085 lncRNA downstream 64912 68211709 ~ 68212001 (+) True G1103800
TU1255113 lncRNA downstream 73359 68220156 ~ 68222116 (+) True G1103819
TU1255095 lncRNA downstream 90039 68236836 ~ 68266542 (+) False G1103801
XM_021624710.2 mRNA upstream 62368 68077590 ~ 68080169 (+) True LOC110538111
XM_036938144.1 mRNA upstream 71964 68065992 ~ 68070573 (+) False LOC110538113
XM_036938145.1 mRNA upstream 71964 68065992 ~ 68070573 (+) False LOC110538113
XM_036938146.1 mRNA upstream 71964 68065992 ~ 68070573 (+) True LOC110538113
XM_036938143.1 mRNA upstream 71965 68065992 ~ 68070572 (+) False LOC110538113
XM_036938149.1 mRNA downstream 4531 68151328 ~ 68203022 (+) True LOC110538117
XM_021624720.2 mRNA downstream 97858 68244655 ~ 68257464 (+) True LOC110538119
XM_021624722.2 mRNA downstream 119899 68266696 ~ 68273592 (+) True LOC110538121
XM_021624723.2 mRNA downstream 128109 68274906 ~ 68289864 (+) True LOC110538122
XM_021624727.2 mRNA downstream 146005 68292802 ~ 68308952 (+) False LOC110538123
TU1254663 other upstream 134060 67987694 ~ 68008477 (+) False G1103416
TU1254582 other upstream 332474 67805349 ~ 67810063 (+) True LOC110538103
TU1253246 other upstream 916738 67225352 ~ 67225799 (+) True G1102115
TU1253139 other upstream 1083130 67058735 ~ 67059407 (+) False G1102021
TU1255479 other downstream 357244 68504041 ~ 68505295 (+) False G1104149
TU1255480 other downstream 357244 68504041 ~ 68505295 (+) True G1104149
TU1255496 other downstream 381484 68528281 ~ 68531861 (+) True G1104162
TU1256153 other downstream 1168935 69315732 ~ 69317648 (+) True LOC110538155
TU1256295 other downstream 1676418 69823215 ~ 69855195 (+) True LOC110538173

Expression Profile