Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_036938149.1 |
| length | 1210 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 10 |
| gene id | LOC110538117 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 68151328 ~ 68203022 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0006886 | intracellular protein transport | biological_process |
| GO:0016192 | vesicle-mediated transport | biological_process |
| GO:0016020 | membrane | cellular_component |
| GO:0005484 | SNAP receptor activity | molecular_function |
| id | description |
|---|---|
| K08486 | STX1B_2_3; syntaxin 1B/2/3 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU1255037 | lncRNA | upstream | 3916 | 68147208 ~ 68147412 (+) | True | G1103752 |
| TU1254670 | lncRNA | upstream | 102611 | 67987694 ~ 68048717 (+) | False | G1103416 |
| TU1254671 | lncRNA | upstream | 142851 | 67987694 ~ 68008477 (+) | True | G1103416 |
| TU1254667 | lncRNA | upstream | 161313 | 67987694 ~ 67990015 (+) | False | G1103416 |
| TU1254668 | lncRNA | upstream | 161313 | 67987694 ~ 67990015 (+) | False | G1103416 |
| TU1255047 | lncRNA | downstream | 1026 | 68204048 ~ 68210597 (+) | True | G1103762 |
| TU1255085 | lncRNA | downstream | 8687 | 68211709 ~ 68212001 (+) | True | G1103800 |
| TU1255113 | lncRNA | downstream | 17134 | 68220156 ~ 68222116 (+) | True | G1103819 |
| TU1255095 | lncRNA | downstream | 33814 | 68236836 ~ 68266542 (+) | False | G1103801 |
| TU1255087 | lncRNA | downstream | 54551 | 68257573 ~ 68266542 (+) | True | G1103801 |
| XM_021624717.2 | mRNA | upstream | 4531 | 68142537 ~ 68146797 (+) | True | prf1.3 |
| XM_036938148.1 | mRNA | upstream | 5701 | 68142537 ~ 68145627 (+) | False | prf1.3 |
| XM_021624710.2 | mRNA | upstream | 71159 | 68077590 ~ 68080169 (+) | True | LOC110538111 |
| XM_036938144.1 | mRNA | upstream | 80755 | 68065992 ~ 68070573 (+) | False | LOC110538113 |
| XM_036938145.1 | mRNA | upstream | 80755 | 68065992 ~ 68070573 (+) | False | LOC110538113 |
| XM_021624720.2 | mRNA | downstream | 41633 | 68244655 ~ 68257464 (+) | True | LOC110538119 |
| XM_021624722.2 | mRNA | downstream | 63674 | 68266696 ~ 68273592 (+) | True | LOC110538121 |
| XM_021624723.2 | mRNA | downstream | 71884 | 68274906 ~ 68289864 (+) | True | LOC110538122 |
| XM_021624727.2 | mRNA | downstream | 89780 | 68292802 ~ 68308952 (+) | False | LOC110538123 |
| XM_021624726.2 | mRNA | downstream | 92808 | 68295830 ~ 68308952 (+) | False | LOC110538123 |
| TU1254663 | other | upstream | 142851 | 67987694 ~ 68008477 (+) | False | G1103416 |
| TU1254582 | other | upstream | 341265 | 67805349 ~ 67810063 (+) | True | LOC110538103 |
| TU1253246 | other | upstream | 925529 | 67225352 ~ 67225799 (+) | True | G1102115 |
| TU1253139 | other | upstream | 1091921 | 67058735 ~ 67059407 (+) | False | G1102021 |
| TU1255479 | other | downstream | 301019 | 68504041 ~ 68505295 (+) | False | G1104149 |
| TU1255480 | other | downstream | 301019 | 68504041 ~ 68505295 (+) | True | G1104149 |
| TU1255496 | other | downstream | 325259 | 68528281 ~ 68531861 (+) | True | G1104162 |
| TU1256153 | other | downstream | 1112710 | 69315732 ~ 69317648 (+) | True | LOC110538155 |
| TU1256295 | other | downstream | 1620193 | 69823215 ~ 69855195 (+) | True | LOC110538173 |
