RNA id: TCONS_00040474


Basic Information

Item Value
RNA id TCONS_00040474
length 3143
RNA type mRNA
GC content 0.46
exon number 13
gene id XLOC_020386
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 20145036 ~ 20155026 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTAGGCGGCGTGAAAGTGCATTCACTGTTGAGTGAATGCAAAAACATTAGACAAAATGGAGAACTTCAATGTAGACCAGATCCGTGCCACCATGGACAAGAAGTCCAACATCCGTAACATGTCTGTAATAGGAGCTTTTGATCACGGCAAATCAACTTTGACAGATTGGCTGGTGTCAAAAGCTGGTATCGTCAGCTCAGCCTGTGCTGGAGAAACCCGATTCATGGATACGAGGCGTGATGAACAAGAGCGTTGCATCACCATCAAGTCAACTGCTATCTCCATATTCTATGAGCTTGCTGATAAGGATTTGGCTTTCATTAAAGAGTGCAAAGATGGCTCCGGCTTCCTCCTCAACCTGATTGACTCCCCTGGGCATGTTGACTTCTCTTCAGAAGTTACAGCTGCACTGCGTATCACAGATGGAGCATTGCTGGTGGTGGATTGTGTGTCTGGTGTGTGCTTACAGACAGAGACTGTGCTCAGACAGGCCATTGGTGAGAGGATTAAACCAGTTTTGATGATTAACAAAATGGATCGAGCTTTGCTCGAGCTACAGTTGGTCCCTGAAGAGCTGTACCAGATCTTTCAGCGCATTGTTGAGAAAGTCAACGTGACCATCTCCACCTATGCTGAGGATGAGAAAGGCCCTATGGGCAACGTCATGATTGATCCTGTCGTTGGTAATCTTGCCTTTGGATCTGGACTGCATGGATGGGCCTTCACTTTGAAGCAGTTTGCAGAGCTCTATGTGAAAAAGTTCGCTGGTAAAGCTCAGCTGAGACCTGAAGAGTACATCAAGAAGGTGGAGGACATGATGAAGAAACTTTGGGGCAACAGCTACTTTGACTCTACTACTGGCAAGTTCAGTGAGTCTGCGACATCCCCAAATGGCAAGAAGCTTCCCAGGACTTTTGTTCAACTAGTCCTGGACCCCATCTTCAAAGTATTTGATGCCATCATGAACTTCAAAAAGGAAGAAACTGCAAAGCTGATTGAGAAGATGGGCATCAAGCTAGATGCAGAGGAGGAGAAGATGGAGGGCAAACTCCTACTGAAGGCTGTGATGCGCCGCTGGCTGCAGGCTGGAGAGGCTCTGCTTCAGATGATCACCATCCACCTGCCCTCACCGGTTACTGCCCAGATTTACCGCTGTGAGCTGCTGTATGAAGGACCTGGAGATGATGAGGCTGCCATGGGCATCAAGAATTGTGACCCTAAAGCACCTCTCATGATGTACATTTCTAAAATGGTACCAACATCTGACAAAGGTTGTTTTTATGCGTTTGGTCGCGTCTTCTCTGGCTGTGTCTCCACTGGCCTGAATGTGCGCATTATGGGGCCCAACTTCACCCCTGGAAAAAAGGATGATCTTTACCTGAAACCCATCCAAAGgACCGTTCTAATGATGGGTCGCTACGTTGAACCCATTGAAGATGTGCCCTGCGGCAATATTGTAGGTCTGTTAGGGGTGGATCTGTTTTTGGTAAAGACTGGAACCATCACTACTTTCACAAAAGCCTACAATATGCGTGTGATGAAGTTTAGTGTCAGTCCTGTGGTGAGAGTGTCCGTGGAGGTCATGGACCCTGCTGACCTTCCTAAACTGGTGGAGGGATTGAAGCATCTGGCCAAGTCAGATCCCATGTTGCAATGCATCTTCGAGGATTCTGGTGAGCATATCATTGCTGGAGCTGGTGAGCTTCACTTGGAGATTTGCCTTAAGGATCTTGAAGAGGTCCATGGTCTCAAGAAATCCGATCTATTTGCTACCTACAGAGAGACAGTCAGTGATGGCTCCAAAAAAATGTGCCTTGCCAAGACCCCAAACCAGCAAAGTCGTCTCTTCTTTAAAGCCTGTCCTCTGGCTGATGGTCTTGCAGAAGATATTGATAAGGGTCGGGTCACTGCCAGCCAGGAGATGAATGCCCGTGCCCAATACCTTGCTGAAAACTATAAGTGGGAAGTGACTGAAGCTCGTAAGATCTGGTGCTTTGGCCCTGAGGGAACTGGACCCAACATCTTGGTAGATTTGACCAAGAGAGTGCAATACTTAAATGAGATTAAGGACAGTGTGATTGCTGGATTTCAGTGGGTCACTAGAGAGGGAATCTTGTGCGCAGAGAACATGCGTGGCATTCGCTTCGACATTCATGATGCAACTTTGACTTCTACTGCCATTCACCGTGGTCCAGGTCAAGTGATTACTGCAACCCGCCGAGTGCTTTATGGCTGTCAGCTCACAGCTGAACCAAGGCTTAGTGAGCCGGTATACCTGGTGGAGATGCAGTGCCCAGAGTCAGTTATTGGTATTATTCATGCTGTACTGGTCAAGAGGCGTGGAGTAGTGTTTTTAGAGTCCCAGGTTACGGGAACTCCTATTTATTTGCTCAAGGCTTACTTGCCTGTCAGTGAGTCATTTGGTTTTACAGCTGACCTTTGTGCCAACACATCTGGCCAAGCCTTCTCACAGTGTGTGTTTGATCATTGGCAGATCATGCCTGGAGACCCATTGAATACTACCTCCAAAACTGCTCATATTATGGCTGACATACGAAAGCGCAAGGGCTTGCCAGAAGCCAATCTAGCTTTACATCGCTTCTTGGACAAATTTTAGGTTTACTGCACAGACTTTAAATCTTGTATTCAAGAACTTGAACCTTTTTTAAGTCAGACCACCCTATAATTCCCacaaaaaacaacactttttagAGAATAAACAGTTAATTTTCAAATGGTTCAGATGTGttaaaccaggggtggccaatcctgttcttggagagctaccttcctgcagatttcagttgctacccatatcaaacacacctgaaccaattaattaggatctaaacaccatgtgataattataggcaggtgtgtttaatatgggttgtaactgaaatctgcaggaaggtggctctccaggaacaggattggacACCCCTGTGTTAAACAGTTCAACACATCATTCCTAATAATGAACTGGTAGGTTCTCTGAAAATGACCAAGTTTAATTCCTCTGTCTGATCTCAAACCTATAATTTTATTGGCTCATGTATGAAAAATGGCAAGAGATCAACCTGAGCATTAATGAAAAGCACTTTCCAAATTAAATTTTCAGACCAGGCATGACCAAACTGTA

Function

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005829 cytosol cellular_component
GO:0003924 GTPase activity molecular_function
GO:0043022 ribosome binding molecular_function
GO:0005525 GTP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-348 Predicted to enable GTPase activity; ribosome binding activity; and translation elongation factor activity. Predicted to be involved in translational elongation. Predicted to act upstream of or within translation. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in glaucoma and spinocerebellar ataxia type 26. Orthologous to human EEF2 (eukaryotic translation elongation factor 2).

Ensembl:

ensembl_id ENSDART00000137624

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042130 lncRNA upstream 94760 20011796 ~ 20050276 (+) True XLOC_020383
TCONS_00041895 lncRNA upstream 305444 19839275 ~ 19839592 (+) True XLOC_020382
TCONS_00042128 lncRNA upstream 1548778 18560343 ~ 18596258 (+) False XLOC_020351
TCONS_00042127 lncRNA upstream 1575648 18560343 ~ 18569388 (+) False XLOC_020351
TCONS_00042131 lncRNA downstream 91446 20246472 ~ 20247476 (+) True XLOC_020390
TCONS_00042132 lncRNA downstream 92883 20247909 ~ 20259347 (+) True XLOC_020391
TCONS_00042133 lncRNA downstream 106205 20261231 ~ 20265527 (+) True XLOC_020392
TCONS_00042134 lncRNA downstream 157777 20312803 ~ 20332834 (+) False XLOC_020393
TCONS_00042135 lncRNA downstream 158179 20313205 ~ 20332834 (+) True XLOC_020393
TCONS_00040471 mRNA upstream 1611 20135443 ~ 20143425 (+) False XLOC_020384
TCONS_00040473 mRNA upstream 2831 20141528 ~ 20142205 (+) True XLOC_020384
TCONS_00040468 mRNA upstream 498615 19640309 ~ 19646421 (+) True XLOC_020379
TCONS_00040467 mRNA upstream 498616 19640309 ~ 19646420 (+) False XLOC_020379
TCONS_00040465 mRNA upstream 582581 19552987 ~ 19562455 (+) False XLOC_020378
TCONS_00040476 mRNA downstream 14326 20169352 ~ 20176716 (+) False XLOC_020388
TCONS_00040477 mRNA downstream 14333 20169359 ~ 20178417 (+) False XLOC_020388
TCONS_00040478 mRNA downstream 16992 20172018 ~ 20181597 (+) True XLOC_020388
TCONS_00040479 mRNA downstream 40254 20195280 ~ 20240937 (+) False XLOC_020389
TCONS_00040480 mRNA downstream 40272 20195298 ~ 20203292 (+) False XLOC_020389
TCONS_00040472 other upstream 5444 20139525 ~ 20139592 (+) True XLOC_020385
TCONS_00040470 other upstream 351803 19793119 ~ 19793233 (+) True XLOC_020381
TCONS_00040469 other upstream 373224 19771698 ~ 19771812 (+) True XLOC_020380
TCONS_00040420 other upstream 906810 19237031 ~ 19238226 (+) True XLOC_020360
TCONS_00040387 other upstream 1890181 18254769 ~ 18254855 (+) False XLOC_020344
TCONS_00040488 other downstream 938825 21093851 ~ 21093965 (+) True XLOC_020402
TCONS_00040522 other downstream 2411148 22566174 ~ 22588719 (+) True XLOC_020427
TCONS_00040524 other downstream 2685532 22840558 ~ 22840675 (+) True XLOC_020429
TCONS_00040525 other downstream 2800706 22955732 ~ 22955849 (+) True XLOC_020430
TCONS_00040526 other downstream 2940662 23095688 ~ 23095804 (+) True XLOC_020431

Expression Profile

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