RNA id: TCONS_00042131


Basic Information

Item Value
RNA id TCONS_00042131
length 652
lncRNA type antisense_over
GC content 0.50
exon number 2
gene id XLOC_020390
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 20246472 ~ 20247476 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATAAGATCCCAACACAACATATAAGAAATGCTGGAATAACAAGTAAAAGTGCCTTTCCTGATTGATCAAAGCAGAaagacatgtgtgtgtgtgcggtgtagGAGCAGTGTGTTCAGACTCTGCGCAGGAAGTTGATCTTGAGGGCCTCAGGGATCTGCATCTGCTCTGCGGTGACCTGCGCTGGAGGATCATGAGGGAAGGTGACAGGAAACACACGCCGGACGTCCAGCAGCAGCTGAGGAGGACCTTCCGAGCGGCCCTTCAGCAGAGCCTgtaaaggaggaagaagaagagtgTTCTCCATCAGCTCTGAACAACAATTGAACACCTTTCTACAGTCCGACTCTTCCTCTCACCTGAACCAGACGGATGAAGTTGAGCGTCACTCGCTCCTCCAGATCACTCTGAGGAGCTGTGCGGCCTGTATCAGCGGCTCCAGAGTCCCCACAGCGCCTCCTGTCTGAAGAGAACGAGCCCGCAGCCACTCCTCCAGCACGCTCACATTATACCTGCAGCATATCAGACCAACAAACACTCCATTTCTATCATAATGCACCGTACAGCATCAGCCTTTTCTGAAATGGTGTTTAAGGATTTTTGCCTTTTTAAACTTCCTGAGAGTCtgatctgctctgattggtcagattttgtG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042130 lncRNA upstream 196196 20011796 ~ 20050276 (+) True XLOC_020383
TCONS_00041895 lncRNA upstream 406880 19839275 ~ 19839592 (+) True XLOC_020382
TCONS_00042128 lncRNA upstream 1650214 18560343 ~ 18596258 (+) False XLOC_020351
TCONS_00042127 lncRNA upstream 1677084 18560343 ~ 18569388 (+) False XLOC_020351
TCONS_00042129 lncRNA upstream 1677084 18565571 ~ 18569388 (+) True XLOC_020351
TCONS_00042132 lncRNA downstream 433 20247909 ~ 20259347 (+) True XLOC_020391
TCONS_00042133 lncRNA downstream 13755 20261231 ~ 20265527 (+) True XLOC_020392
TCONS_00042134 lncRNA downstream 65327 20312803 ~ 20332834 (+) False XLOC_020393
TCONS_00042135 lncRNA downstream 65729 20313205 ~ 20332834 (+) True XLOC_020393
TCONS_00041896 lncRNA downstream 186094 20433570 ~ 20434017 (+) True XLOC_020395
TCONS_00040481 mRNA upstream 5240 20208185 ~ 20241232 (+) True XLOC_020389
TCONS_00040479 mRNA upstream 5535 20195280 ~ 20240937 (+) False XLOC_020389
TCONS_00040480 mRNA upstream 43180 20195298 ~ 20203292 (+) False XLOC_020389
TCONS_00040478 mRNA upstream 64875 20172018 ~ 20181597 (+) True XLOC_020388
TCONS_00040477 mRNA upstream 68055 20169359 ~ 20178417 (+) False XLOC_020388
TCONS_00040482 mRNA downstream 179694 20427170 ~ 20429374 (+) True XLOC_020394
TCONS_00040483 mRNA downstream 214012 20461488 ~ 20473567 (+) True XLOC_020396
TCONS_00040484 mRNA downstream 299136 20546612 ~ 20547407 (+) True XLOC_020397
TCONS_00040485 mRNA downstream 312565 20560041 ~ 20560787 (+) True XLOC_020398
TCONS_00040486 mRNA downstream 462958 20710434 ~ 20712654 (+) True XLOC_020400
TCONS_00040475 other upstream 94491 20151925 ~ 20151981 (+) True XLOC_020387
TCONS_00040472 other upstream 106880 20139525 ~ 20139592 (+) True XLOC_020385
TCONS_00040470 other upstream 453239 19793119 ~ 19793233 (+) True XLOC_020381
TCONS_00040469 other upstream 474660 19771698 ~ 19771812 (+) True XLOC_020380
TCONS_00040420 other upstream 1008246 19237031 ~ 19238226 (+) True XLOC_020360
TCONS_00040488 other downstream 846375 21093851 ~ 21093965 (+) True XLOC_020402
TCONS_00040522 other downstream 2318698 22566174 ~ 22588719 (+) True XLOC_020427
TCONS_00040524 other downstream 2593082 22840558 ~ 22840675 (+) True XLOC_020429
TCONS_00040525 other downstream 2708256 22955732 ~ 22955849 (+) True XLOC_020430
TCONS_00040526 other downstream 2848212 23095688 ~ 23095804 (+) True XLOC_020431

Expression Profile

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