RNA id: XR_002475702.2



Basic Information


Item Value
RNA id XR_002475702.2
length 704
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC110538148
representative False

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 69171519 ~ 69175969 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGGTAAGGATGGAGTAGAGTGGGAACCGTTGGAGGTAGAGTAGTGAGAGTAAAGGTTAAGAAGAGGAAGCATGAGGAGTCTTTGGAGTTCTTGTCGGAGGAGAGTTGCGATGAGGCATTTTCAGTTCGCAGTGTTGTACTGAGATAAGTGGAGTTCATGGTGTTGGTGAAATTTAAGGACGAGGATGGGGTCACTGCGGTGAGTCTGATCAAGTTGACCAGGGGATTTGGAGAGAAAAGTAGGAGAGGTTGATTCTGCTAAAGTTCTTCGTATGAGAAGGCTCACAAACTCAAGCAGAAGTGGCCTGCTATGACAAGACTGCTGAGGCAACGACTACTGCATCAGAACACCACGATGCTGACGCGACCAACGCTCCAATGCCAAACAGCTATGGACTCTAGTGGTGTACACCGGTGTTGGTAGTGATCTTGACTCCAGACGCCTGTTAACAAAGATCCTGAATATGGCGAGGGCAACTCAAGTAGCTGTCAGTCCAAACATTAGGCTTGGACTGCGGCAGGTTCCTGCCAATGCCCTGAACTGCCTTGATTTATTTACTGTCATTCACTCGAGGTACTAGGAAAGGTGTTTGCTTATCTAAAAGCTGAGCTTGGGCAAATCCCTTGGGTTGACAAAGATCCTGAACATGAAGCTGAACACCTACTTATTGAGATGTATCATAGTAAAACTCTACCAAAGAACAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1256126 lncRNA upstream 10801 69160451 ~ 69160718 (+) True G1104709
TU1256124 lncRNA upstream 12018 69159279 ~ 69159501 (+) True G1104707
TU1256072 lncRNA upstream 50098 69119873 ~ 69121421 (+) True G1104661
TU1256077 lncRNA upstream 67342 69103884 ~ 69104177 (+) True G1104666
TU1256018 lncRNA upstream 83182 69084363 ~ 69088337 (+) True G1104609
TU1256141 lncRNA downstream 12601 69188570 ~ 69188771 (+) True G1104724
TU1256143 lncRNA downstream 14374 69190343 ~ 69191367 (+) True G1104726
TU1256160 lncRNA downstream 29176 69205145 ~ 69205398 (+) True G1104741
TU1256158 lncRNA downstream 34555 69210524 ~ 69212869 (+) True G1104739
TU1256156 lncRNA downstream 37449 69213418 ~ 69215595 (+) True G1104737
XM_021624778.2 mRNA upstream 2631 69166428 ~ 69168888 (+) True LOC110538147
trnac-gca-6 mRNA upstream 62376 69109072 ~ 69109143 (+) True trnac-gca-6
trnac-gca-5 mRNA upstream 70438 69101010 ~ 69101081 (+) True trnac-gca-5
XM_021624765.2 mRNA upstream 255129 68914297 ~ 68916390 (+) True LOC110538140
XM_021624754.2 mRNA upstream 376901 68788369 ~ 68794618 (+) False LOC110538134
LOC110538150 mRNA downstream 21697 69197666 ~ 69229200 (+) True LOC110538150
XM_036938216.1 mRNA downstream 139482 69315451 ~ 69321518 (+) False LOC110538155
XM_036938217.1 mRNA downstream 139482 69315451 ~ 69321518 (+) False LOC110538155
XM_036938215.1 mRNA downstream 139485 69315454 ~ 69321518 (+) False LOC110538155
XM_036938219.1 mRNA downstream 227024 69402993 ~ 69435277 (+) True LOC110538157
TU1255496 other upstream 639658 68528281 ~ 68531861 (+) True G1104162
TU1255479 other upstream 666224 68504041 ~ 68505295 (+) False G1104149
TU1255480 other upstream 666224 68504041 ~ 68505295 (+) True G1104149
TU1254663 other upstream 1163042 67987694 ~ 68008477 (+) False G1103416
TU1254582 other upstream 1361456 67805349 ~ 67810063 (+) True LOC110538103
TU1256153 other downstream 139763 69315732 ~ 69317648 (+) True LOC110538155
TU1256295 other downstream 647246 69823215 ~ 69855195 (+) True LOC110538173
TU1256653 other downstream 846739 70022708 ~ 70025363 (+) False G1105194
TU1256654 other downstream 846739 70022708 ~ 70048987 (+) True G1105194
TU1256743 other downstream 986720 70162689 ~ 70194672 (+) True G1105281

Expression Profile