RNA id: LOC110538150


Basic Information

Item Value
RNA id LOC110538150
length 2012
RNA type mRNA
GC content 0.53
exon number 9
gene id LOC110538150
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 69197666 ~ 69229200 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGGCTGGGGCTCAGGGGTGGGGTTGGAAAATGCAGAAGGAGCAACAGCTTGAGCTCTGGGACTACAGTGGACAGAAAGTAAGAGCATGGTGTGCTCTCAatgaaggagtgagaaagaggaagccagaaagagagatgaaagaaaaCAAGACACATCAATCTACGTAAAGGAGGGCGTGAGGACAAGACGGACATTGTAGTTCTACAGGAGCCgagtggagagggagaaaagaggggggaaaggagagaaagaaaggagagaggcgCATGAGGTATTTTTATAGGGCACAGACAGAGATATGATAGCCTGCTTACAGAAGCGGTGTGCCTGGAAACGCTCAGAAAGAGagcgagtgggagagagagcgagagaaagagagggtgaaaaaggaggggggagtgagtgagacagaaagATTAACCAGTCAGAAAGAGCGAGAGTGAGCAGTGAAGTACAATCGGGGAGAAAAggcaagggagggaggagggtgcatgagaggtaaaaaaaataagaaaatgaaACAGGGGAAAGGTGCCAAAACAAACTAATGTGTCAGTGCTGAGTGAGGGAcactagaagagagagagagagagagagaagagggccaGCCAGAGGACGtagtagggggagagaggcatGAGGGGACTGTTCTGCTTTATGCTCACCCTGTCCATCCTGGGGACTGTCCTGACTGCACTCGTCTGGTATGTCTTCAGAGACCGCAATGTTCAACCTGGCATACCCCCCCACAAAGATCCTATTATGAACTCTGGGCCAGTCCCCTCCGGAACATGCAAGGGCTGCAGggATACAGTTACTGAAAAAGTGGTGGAGCGCTACTCTCACAGCTGGAAGAAGCAGGAGGACAAGTTCAGAAATTTCAGGTCTCTTCTGAGTAACAGATGTCATGGACTTACCAAGGCTATGGTGACACAGGCCAACACTCCTCTGGGGTCAAAGGTTGTGTAcgatggagagaagaggaagcCTCTTCAGGTGACCCCTGAACTGTTCAGCACCTTTGCTAAGGAGAATCCTTTTGTGAATACAACATGGGATACGTGTTCTGTTGTTGGGAATGGGGGAATCCTAGCTAATAGCAGCTGTGGAGAGAAAATCGACTCCGCCCAGTTTGTTATCAGGTGTAATCTCCCTCCTCTGGAGAACGGCTATGAGAGAGACGTGGGCAACAAGACAGACCTGGTGACAGCTAATCCCAGCATCCTCATGGAGAAATATGGGGGACTGCAGGAGCGTCGTCGGCCCTTCGTGGAGAGCCTGCGTAGCTATGGCGACTCCCTGATGCTCTTGCCAGCCTTCTCGTATGGCCCCAACACGCCTGTGTCTCTGCGGGCCCTCTACACCATCCAGGACTTTGACAGCCCCTTGCGGCCTGTCTTCCTCAACCCAGAGTACCTACAGAGTCTGGCGCACTTCTGGCAGGGCCAGGGCCTGCGGACGGTACGCCTCAGCACAGGACTCATCGTGGCTAGCCTGGCGCTGGAGCTGTGCACCAACGTGCATCTCTATGGGTTCTGGCCCTTTAATGAACACCCCCTCCGACACCAGCCCCTCACCAACCATTACTACGACGACAGGCAGAGTAAGAAGACGGTGCACGCTATGCCCGCTGAGTTTGACCACCTGCTTAGACTCCACAGCCAGGGCGTGCTCAGGATACACCTGGGAGAGTGTGCGCCCATGGCCAGTCCTAGATGTAGCACAGAGATGGCTGGGCCCCAGCCTCAGTCTCCCGGTTGGCTCTCTGGGTCGTGCCATGCCCACACTGGCACAATGCAACACAACCTCCCAGACACAGAAGCCTTGGGCAAAAACACAGAAGGGGGAACAGAAGGAGACCAGGGAAGTGATGACACCCATAAACATTTCTGGGCAAGCTGTGGCAGAGGGGGATCTCGAGTGACACCTGTCATTGAGTCATCGCCGTGTGAAAGGAAGATCTGGGTAACAGACCCCTGGATGTTAACATACGGTCTCTCTGGAATGGGAA

Function

GO: NA

KEGG:

id description
K06615 SIAT8F; alpha-N-acetyl-neuraminate alpha-2,8-sialyltransferase (sialyltransferase 8F)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1256143 lncRNA upstream 6299 69190343 ~ 69191367 (+) True G1104726
TU1256141 lncRNA upstream 8895 69188570 ~ 69188771 (+) True G1104724
TU1256122 lncRNA upstream 21703 69173782 ~ 69175963 (+) True LOC110538148
TU1256126 lncRNA upstream 36948 69160451 ~ 69160718 (+) True G1104709
TU1256124 lncRNA upstream 38165 69159279 ~ 69159501 (+) True G1104707
TU1256169 lncRNA downstream 13359 69242559 ~ 69242857 (+) True G1104749
TU1256171 lncRNA downstream 15793 69244993 ~ 69245228 (+) True G1104751
TU1256176 lncRNA downstream 28307 69257507 ~ 69257761 (+) True G1104756
TU1256177 lncRNA downstream 28609 69257809 ~ 69258046 (+) True G1104757
TU1256187 lncRNA downstream 57339 69286539 ~ 69286884 (+) True G1104767
XR_002475702.2 mRNA upstream 21697 69171519 ~ 69175969 (+) False LOC110538148
XR_005035121.1 mRNA upstream 21697 69173773 ~ 69175969 (+) False LOC110538148
XM_021624778.2 mRNA upstream 28778 69166428 ~ 69168888 (+) True LOC110538147
trnac-gca-6 mRNA upstream 88523 69109072 ~ 69109143 (+) True trnac-gca-6
trnac-gca-5 mRNA upstream 96585 69101010 ~ 69101081 (+) True trnac-gca-5
XM_036938216.1 mRNA downstream 86251 69315451 ~ 69321518 (+) False LOC110538155
XM_036938217.1 mRNA downstream 86251 69315451 ~ 69321518 (+) False LOC110538155
XM_036938215.1 mRNA downstream 86254 69315454 ~ 69321518 (+) False LOC110538155
XM_036938219.1 mRNA downstream 173793 69402993 ~ 69435277 (+) True LOC110538157
XM_021624797.2 mRNA downstream 381599 69610799 ~ 69612255 (+) True LOC110538162
TU1255496 other upstream 665805 68528281 ~ 68531861 (+) True G1104162
TU1255479 other upstream 692371 68504041 ~ 68505295 (+) False G1104149
TU1255480 other upstream 692371 68504041 ~ 68505295 (+) True G1104149
TU1254663 other upstream 1189189 67987694 ~ 68008477 (+) False G1103416
TU1254582 other upstream 1387603 67805349 ~ 67810063 (+) True LOC110538103
TU1256153 other downstream 86532 69315732 ~ 69317648 (+) True LOC110538155
TU1256295 other downstream 594015 69823215 ~ 69855195 (+) True LOC110538173
TU1256653 other downstream 793508 70022708 ~ 70025363 (+) False G1105194
TU1256654 other downstream 793508 70022708 ~ 70048987 (+) True G1105194
TU1256743 other downstream 933489 70162689 ~ 70194672 (+) True G1105281

Expression Profile