RNA id: TCONS_00042132


Basic Information

Item Value
RNA id TCONS_00042132
length 1504
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id XLOC_020391
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 20247909 ~ 20259347 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cactgtggtcataaagggatgttgttggtactaatgggcccaaagtgtgccaagaaaatatcccccacaccattacaccaccaccaacagcctaaaacattgatacaaggcaggattggttcatgcttttatgtcattgtggcacctggtgtggttttctgctgctgtagcccatccgcctcaaggttacacgtgttgtgcattaagagatgctcttctgcagaccttcggttgtaacaagtggtaatttgagttactgttgcctttctgtcagctggaaccagtttagccattctcctctgacctctggcatcaacaaagcgtttgtgcccacagaactgccactcactggatattttctctttttcgggcCATTGTCTATTCCTATTGATGGAttgagatcagcagtttctgaaatactcagaccagcctgacTGAGACCATcagccatgccatgttcaaagtcacttaaatcacctttctttaccattctgatgctcggtttctacagcagatcgtcttgaccatgtctacatgcctaaatggattgagtcgctgccatgtgattggctgattagaaatttgcgttaacgagcagttggacaggtttacctaataaagtggccagttagtatataagtgaattgggtagcaATGTTGTCTCTCGAAATTATAGTAACGCAGCATAAtgtccatcagccaatcagaataaagcATTAAAGAGCCCTGTAGTATAAAAAAGGTAAGTTTGGACACTGTGAATACTATGTGAAGAGCGCGGCGTATAGCACAAACCGGATCTGCAGGCCTCGGCTCCAGCAGCACATGTCCTTGCGCAGCAGCAGACTGTTGAGGGTGGATGCGGACAGCAGGTACACGAGCTGGTGAAAGGCCTGTTCCTGCAGGACGGAGGGCAGGTGTTGACGGGACAAGGCCGTGTGAAGGGCCGAAAGCTCCCGCAGGACTGAGGACATACTGACTCCTTCTGAACCGCCTGGAGGACGCGGATCTGAACCGGCCCGCTTACGAGCAGCGCTCAGCTTTACTGAGGATCCAGCCAGACCAGGAATCATCTCACTCTCCAGCATCGCCGGGACTGCATGGGTGCACAAACTTACATGGCAGTTTTAATGCCGCTCACAACAGCACTGCAAAGTCCCTTGACCCGTGCCTGATCTCCGCTGCAGTCCACCTGacgcacacacagaaacaaaaccCGAGCCACTAGTCCAGGAGATGAAGACAAGACGCTCTCTGCTCGCACGTCTGCCACAGAAACGCATTCATTCCTGTCAGTCAGCCAGCATTCATAAATAAATCCAGCTGTTGTGAGTGCCGTTTACCTGTTATGAGGTGTTTGATCAGTTTGCTCTCATCTTTTTTCCTGCACTCCAGCAGTCCAGTGATCGTCTGGTTCCGCTGAGGAGAAGGAGATGTTGGGTCCTGAGACTCGGCCACGACTAGACCTGAGAGTGATCCAAAACATACAGTCATGGAAAAAAAT

Function

GO:

id name namespace
GO:0006323 DNA packaging biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042131 lncRNA upstream 433 20246472 ~ 20247476 (+) True XLOC_020390
TCONS_00042130 lncRNA upstream 197633 20011796 ~ 20050276 (+) True XLOC_020383
TCONS_00041895 lncRNA upstream 408317 19839275 ~ 19839592 (+) True XLOC_020382
TCONS_00042128 lncRNA upstream 1651651 18560343 ~ 18596258 (+) False XLOC_020351
TCONS_00042127 lncRNA upstream 1678521 18560343 ~ 18569388 (+) False XLOC_020351
TCONS_00042133 lncRNA downstream 1884 20261231 ~ 20265527 (+) True XLOC_020392
TCONS_00042134 lncRNA downstream 53456 20312803 ~ 20332834 (+) False XLOC_020393
TCONS_00042135 lncRNA downstream 53858 20313205 ~ 20332834 (+) True XLOC_020393
TCONS_00041896 lncRNA downstream 174223 20433570 ~ 20434017 (+) True XLOC_020395
TCONS_00042136 lncRNA downstream 312487 20571834 ~ 20573960 (+) True XLOC_020399
TCONS_00040481 mRNA upstream 6677 20208185 ~ 20241232 (+) True XLOC_020389
TCONS_00040479 mRNA upstream 6972 20195280 ~ 20240937 (+) False XLOC_020389
TCONS_00040480 mRNA upstream 44617 20195298 ~ 20203292 (+) False XLOC_020389
TCONS_00040478 mRNA upstream 66312 20172018 ~ 20181597 (+) True XLOC_020388
TCONS_00040477 mRNA upstream 69492 20169359 ~ 20178417 (+) False XLOC_020388
TCONS_00040482 mRNA downstream 167823 20427170 ~ 20429374 (+) True XLOC_020394
TCONS_00040483 mRNA downstream 202141 20461488 ~ 20473567 (+) True XLOC_020396
TCONS_00040484 mRNA downstream 287265 20546612 ~ 20547407 (+) True XLOC_020397
TCONS_00040485 mRNA downstream 300694 20560041 ~ 20560787 (+) True XLOC_020398
TCONS_00040486 mRNA downstream 451087 20710434 ~ 20712654 (+) True XLOC_020400
TCONS_00040475 other upstream 95928 20151925 ~ 20151981 (+) True XLOC_020387
TCONS_00040472 other upstream 108317 20139525 ~ 20139592 (+) True XLOC_020385
TCONS_00040470 other upstream 454676 19793119 ~ 19793233 (+) True XLOC_020381
TCONS_00040469 other upstream 476097 19771698 ~ 19771812 (+) True XLOC_020380
TCONS_00040420 other upstream 1009683 19237031 ~ 19238226 (+) True XLOC_020360
TCONS_00040488 other downstream 834504 21093851 ~ 21093965 (+) True XLOC_020402
TCONS_00040522 other downstream 2306827 22566174 ~ 22588719 (+) True XLOC_020427
TCONS_00040524 other downstream 2581211 22840558 ~ 22840675 (+) True XLOC_020429
TCONS_00040525 other downstream 2696385 22955732 ~ 22955849 (+) True XLOC_020430
TCONS_00040526 other downstream 2836341 23095688 ~ 23095804 (+) True XLOC_020431

Expression Profile

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