RNA id: TU1256153



Basic Information


Item Value
RNA id TU1256153
length 698
RNA type TUCP
GC content 0.54
exon number 4
gene id LOC110538155
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 69315451 ~ 69321518 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTTTGAACAACATGCAAGGGAAGCACGTCCACGTCTTTGGTGCGAGACGAGAGATATGAGAGGCTTCTAAAAAGATGGCGGAGCAGTGCAGGACAGTAAGGGTGAGTGGCCTGCCCACTGATATGAAGGAGGACCGGCTGACAGACAAGCTATACATCTACTTCCTGAGGGCcaggaatggaggaggggaaATAGCACATGTCACCATTGTCAAGGCAACACCCGGCTCTGCCCTCATCACCTTTGAGGACATTGGAGTGGCAAGGAGCGTGCTTCAACATGGCCGACACATTCTGACGGTGGACGGGAAGAAGTATGAACTCACCTTGAGTGAACCTCACAAAGACCTGAACCCAAATAAGgTCATCTTGAGCATGTCTGTTACTTTGGACTACAGCCAGCTACCTGGAGGAAAGGCAGCATTGACCAGCCTTGACAGGAGTCATGATCTCCAGATCCGCTATAACAACCCAGAGCAGCTCTGCACCTTGCAGGGCCTCTACTCCCAGGTCCAGGCTGCACTGGCCCAAATACTGGGGCTCCCTGGGGTCCTGGCCTCCACAGATACACCCCCAGCTGGGGCCAATGGTGTTCTGGGAGTCCTCACTAGAGGCACTAGGGGCCAAGTGAAAAGGACTCATACCCAGGAGGCAGCAGACCATCACAGGAGAGGTGATGAGCAAAGTGATCGAGGCTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1256200 lncRNA upstream 439 69315093 ~ 69315293 (+) True G1104776
TU1256199 lncRNA upstream 668 69314759 ~ 69315064 (+) True G1104775
TU1256149 lncRNA upstream 1368 69310503 ~ 69314364 (+) True G1104732
TU1256190 lncRNA upstream 18163 69297239 ~ 69297569 (+) True G1104770
TU1256188 lncRNA upstream 25500 69288974 ~ 69290232 (+) True G1104768
TU1256152 lncRNA downstream 4014 69321662 ~ 69334729 (+) True G1104733
TU1256209 lncRNA downstream 34393 69352041 ~ 69437540 (+) False G1104781
TU1256211 lncRNA downstream 34393 69352041 ~ 69437721 (+) True G1104781
TU1256256 lncRNA downstream 87490 69405138 ~ 69405394 (+) True G1104821
TU1256265 lncRNA downstream 93594 69411242 ~ 69452170 (+) True G1104828
LOC110538150 mRNA upstream 86532 69197666 ~ 69229200 (+) True LOC110538150
XR_002475702.2 mRNA upstream 139763 69171519 ~ 69175969 (+) False LOC110538148
XR_005035121.1 mRNA upstream 139763 69173773 ~ 69175969 (+) False LOC110538148
XM_021624778.2 mRNA upstream 146844 69166428 ~ 69168888 (+) True LOC110538147
trnac-gca-6 mRNA upstream 206589 69109072 ~ 69109143 (+) True trnac-gca-6
XM_036938219.1 mRNA downstream 85345 69402993 ~ 69435277 (+) True LOC110538157
XM_021624797.2 mRNA downstream 293151 69610799 ~ 69612255 (+) True LOC110538162
XM_021557684.2 mRNA downstream 412609 69730257 ~ 69735305 (+) False LOC110486238
XM_021557685.2 mRNA downstream 412883 69730531 ~ 69735305 (+) False LOC110486238
XM_036938229.1 mRNA downstream 414251 69731899 ~ 69735305 (+) True LOC110486238
TU1255496 other upstream 783871 68528281 ~ 68531861 (+) True G1104162
TU1255479 other upstream 810437 68504041 ~ 68505295 (+) False G1104149
TU1255480 other upstream 810437 68504041 ~ 68505295 (+) True G1104149
TU1254663 other upstream 1307255 67987694 ~ 68008477 (+) False G1103416
TU1254582 other upstream 1505669 67805349 ~ 67810063 (+) True LOC110538103
TU1256295 other downstream 505567 69823215 ~ 69855195 (+) True LOC110538173
TU1256653 other downstream 705060 70022708 ~ 70025363 (+) False G1105194
TU1256654 other downstream 705060 70022708 ~ 70048987 (+) True G1105194
TU1256743 other downstream 845041 70162689 ~ 70194672 (+) True G1105281
TU1256825 other downstream 1007310 70324958 ~ 70327126 (+) True G1105357

Expression Profile