RNA id: XM_021624797.2


Basic Information

Item Value
RNA id XM_021624797.2
length 1457
RNA type mRNA
GC content 0.46
exon number 1
gene id LOC110538162
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 69610799 ~ 69612255 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCACGAAAGCACACACACGCGGGCACAGGTGCGCATGCAGGGCAGTCTTACATACAGACTTAAACCTCCTTCGAGATGTCCAATGGGACCCGCTTAATTAAGAGGTTCGAGCTACGTAGAAGTTGTGTTCAGTTTAATACTTTGACTTGCAAGTATGATGGTGATACGGCATCTGGTTAGGGTTGTGATAGTTTCTCTCCGCTGATACGCACCGACATATCAGCTTTTGGTAGTGCTGTTATTACCGAATTTAAAAGAAGATTATATATTTCTCATTTGATTTttactttgatttgttttcacAGTCACATGACGCAAAGTGCAACTGCGAGACAGGGTTTTgccgtgagtgtgtgtctgtggaacCGCGTGCGCCCATAGCTGCCATTAGCGCTGTCAGACTGACATCCACGGAGACATGAACGGCTCCTTCTTCGACCAAGCCCAGGGCGCACTATTCAACAGTAGCCAAGTCCTCGCCGGTACTCTGGTGAACTGCTGCAACGGGACGGACGTGGCAACCAGTGACGGCGGCTCGCTGGCGCTACCTCCGGACGAGCGGAAACTCTTTATCAGTCGCGTCGTACAGATCGCGGTCCTGTGCGTACTGTCGCTCACCGTCATTTTCGGCATCTTTTTCCTCGGCTGTAACCTCATGATCAAATCGGAGAGTATGATTAACTTTATGGTGAAGGACCGGAGACCTTCCAAAGACATAGAGGCCCCGGTGATGATAGGACTCAGCTAGTCTATGGCGCCGGGATGGAGAATGGTGTGTAGCCGCGCGCCACGGACCTATAGCCTCAACACGCTGTATTTGGGGCGGCACGATGATATGCAATGCGTTTGATTTCCTTGCAAAATATCTTTGCCAATATAGACTGCAATTGCAATCAAGCGCGGCCAATTCCTCACATCAAACGTTTAAGGAGAACCAGGAATGCATCGTTGTTTACTCATAGGCTGTTGGATATTGTTTTGGTATTAACTGTCAACTTGAAAAAAGTAATGGACTCTTGTGATAAAAATGTTTACACGTTGTTACCTCAAATTATATTCGCAAAAGTCGATATTTCCATGATTGTTTAACAACTTTACGCATGCATATTGTATGTGTTTTTCCCATTTCAGTTCTGACAGTAGGCTATACATTTTGGACGTGGGAATTctctgaaaatatatatttttcttggtCCCGTTTCTTATTGGCATGTCTGGCAAATACTCAAGGTGCTGGGATCTTGCATGTTTAACAAACCCCATCACTGCTTCAACGACTGTTCTCATGTCCAGTTCAGCATGCACGCGGCTTGGTCTGTAGCCTACAGTACAAAGTGGTATTTGGACCTACTGTTTTTGTACTTTTTGAATGCACCTGATGCTGCATGATTTTTGTACCCAGATGAAACTTGAATGAAAAGTGCAGCATGCTACGAATAAACGTGACGTTCTCGTA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1256352 lncRNA upstream 18386 69588532 ~ 69592413 (+) True G1104909
TU1256350 lncRNA upstream 114241 69496349 ~ 69496558 (+) True G1104907
TU1256341 lncRNA upstream 122738 69487777 ~ 69488061 (+) True G1104898
TU1256336 lncRNA upstream 133714 69476886 ~ 69477085 (+) True G1104893
TU1256328 lncRNA upstream 140856 69469723 ~ 69469943 (+) True G1104885
TU1256405 lncRNA downstream 12736 69624991 ~ 69627554 (+) True G1104956
TU1256300 lncRNA downstream 71423 69683678 ~ 69695205 (+) True G1104857
TU1256282 lncRNA downstream 72975 69685230 ~ 69718282 (+) False G1104843
TU1256283 lncRNA downstream 72975 69685230 ~ 69688169 (+) True G1104843
TU1256302 lncRNA downstream 77107 69689362 ~ 69690223 (+) True G1104859
XM_036938219.1 mRNA upstream 175522 69402993 ~ 69435277 (+) True LOC110538157
XM_036938216.1 mRNA upstream 289281 69315451 ~ 69321518 (+) False LOC110538155
XM_036938217.1 mRNA upstream 289281 69315451 ~ 69321518 (+) False LOC110538155
XM_036938215.1 mRNA upstream 289281 69315454 ~ 69321518 (+) False LOC110538155
LOC110538150 mRNA upstream 381599 69197666 ~ 69229200 (+) True LOC110538150
XM_021557684.2 mRNA downstream 118002 69730257 ~ 69735305 (+) False LOC110486238
XM_021557685.2 mRNA downstream 118276 69730531 ~ 69735305 (+) False LOC110486238
XM_036938229.1 mRNA downstream 119644 69731899 ~ 69735305 (+) True LOC110486238
XM_021624807.2 mRNA downstream 187419 69799674 ~ 69819817 (+) False LOC110538170
XM_036938230.1 mRNA downstream 242525 69854780 ~ 69875030 (+) False LOC110538173
TU1256153 other upstream 293151 69315732 ~ 69317648 (+) True LOC110538155
TU1255496 other upstream 1078938 68528281 ~ 68531861 (+) True G1104162
TU1255479 other upstream 1105504 68504041 ~ 68505295 (+) False G1104149
TU1255480 other upstream 1105504 68504041 ~ 68505295 (+) True G1104149
TU1254663 other upstream 1602322 67987694 ~ 68008477 (+) False G1103416
TU1256295 other downstream 210960 69823215 ~ 69855195 (+) True LOC110538173
TU1256653 other downstream 410453 70022708 ~ 70025363 (+) False G1105194
TU1256654 other downstream 410453 70022708 ~ 70048987 (+) True G1105194
TU1256743 other downstream 550434 70162689 ~ 70194672 (+) True G1105281
TU1256825 other downstream 712703 70324958 ~ 70327126 (+) True G1105357

Expression Profile