RNA id: XM_036938229.1


Basic Information

Item Value
RNA id XM_036938229.1
length 2791
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110486238
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 69730257 ~ 69735305 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTCATAATAACAATGtacattattattaatattattattattagaataATTTATTGGCAATCAAAATGGATCTTTGTGGATAATATTAACCCTTGTTATCCTATAGGGCTCTCTGGTAGGATATAAGGATAAGGTTGAGCGTGATAAGACAACAGCGGCTCTGCAGTGCCGCAATGTTGACTAGGCTGTTCAGTGACCCGTCGCTGCTTCCCGACATGCAGAAGTATTCGGCCTGGGCAGAGGACAGCGAGAGCGAGGACTCGAAGACCAAGGAGGATGAGGATCACTGCCGCGTGGGCGATGACGACATGGATGTCCCGGACCTGAGAAGCAGCCGGGCACATTCTGAGATCGGCGGTGAAGACGAGGACGACGACGAGGCGGATGAGGACGAAGGAGAAGACGGTGCAGAGGGGGACGGGCCCAAAAAACGGGGCCCTAAGAAGCGTAAAATGACACCTGCCCGTATCGAGCGCTCCAAGTTGCGTCGTCAGAAGGCAAACTCACGGGAGAGGACGCGCATGCACGATCTGAACTCTGCGCTCGACAATCTGCGCAAAGTCGTACCCTGTTACTCCAAAACGCAAAAGCTCTCCAAAATCGAGACTCTCCGTTTGGCCAAGAACTATATCTGGGCCCTCTCTGAGATCCTGCGCTCCGGGAAGAAGCCTGATATTGTGTCCTACGTGCAGACGCTGTGTAAAGGATTGTCCCAACCCACGACCAACCTGGTTGCGGGTTGTCTGCAGCTCAACTCCCGAAACTTCCTAACGGAGCAGTGTCCGGAGGGAGGACGCTATCCCAGCTCCAACTCCTTCTCCATGCATCCTTACCCCTACCAGTGCTCCCGCCTCTCCAGCCCTCAGTATCAGTCTGGTTCCAACTCGCATCCCTTACGGACACAAGGGTACTGCTCAGCCTACGATTCACTGTACGGTGGCAGTGGATCTCCAGAATACAACAGCCCAGAGTATGAGGGGCCCATCTCCCCTCCCGTGTGCATCAATGGCAACTTTTCTCTGAAGCACCAGGGCACTACGTCCCCCGAGGTAGCCGAGAAAGGCTACCATTACTCTATGCATTACTCCGGCCTGGCCGGCTCTCGCCCCACTGCTGGCCACATATACGGTTCTTCAGGTGTGCGGAGCAGCATCCACTCTGAAAACGTATCGCCTTACCACGACATGCACCTGCACCACGAAAGAGCCCCCGTCCCCGTATACGATGAACTCAATGCGTTTTTCCACAACTGAAACGGCAGTAATATTGCCATGCGTGGGAGTCTTCTTGCAATCAACAATCAATTAGTTGCCCACCTTTGGCAAGGAGCGTGCACGGTCACCCCCCAGCCCCTACCCTAATACTTAGTCTCAAAGGACTATGACACCAGACACTGATCATTGCGGAAACAGcgttttatttattgtttttctATGTCCTTTtatataattgtatttattttgtttctATTCTGTGACGATGGGATGCTGTGAAAATGTTGCATTTGAAATGGAATGTGTACAGATTTGACGGTGATTGGCGTATGGGTTATTATTGAAATTGCTAGATGAACATAGTTAAAATGCAACCGCATAGTCACGTTTATAACATTGTAACAACCGATGATGCTGTAACTAATTTGGAAATAATAGCCTAATATGAAAATAGAGGATTCAATTAAGAAGCAAGCAGTGCACTTAAAAGCAAGCATGTCGCAGAGATaggaagatatatattttttaaatgtcggCAATTGGCAACAGCTATGTCTGATCATTAAACACATTTCACATCTATGCAAGAACTAGCCTACGCCAAACGAGTATACAAGGACCAACTATAGGCTATATCTAAAATAGTGTACATTAAATCATTCATTTAAATCTTCTCAACAATATACTTTCATTGCTTCTCAGCCCCTATTCTGATTACCATAACACACACGGTGGGGAATTGCTTGACGTCTATTTTTGTTATTGAGGGACATGGATTCAAGTCACCATAATGACACAGAGAATACAATTTTCGATCCCTAGAATACCACCAATGGATAAGGAAAAGCAAAGGAAAATGAAACACTACTTGGCAGAGTAGGCCTATAAGGCTAAAGCCAACATTTGAAATGAACGATTCTAAAGAAGCAGATATGGGCTCATGCTACCGGTTCCGGATGGTCAAGTCCTTCTAATGTAAACGATTCGATAGTGTTTACGTTCATTAGATGAGGCTACCTTTGATGGATTTGCAAGTTTGCACTAGATTTTAGATTGCATTTTAATGCAATCGAAAATGGTTTAATGTAAGCCAATAGCCTTTGCCTTTATACATCTACTGGCCTTTATACATCTACAATCCTGTCAGTGACTGGACGGAAAATGGGACAGGCCGATATTAAATATGCTAAACACAATATTTCATGTCATGCCACAGGAACAAATATGGCAAGTCAAGTAACTTTCTAAATCAATCGAGCACATTGACTTGTTGAATAGGACTATTTCTAAAAGTGTAAGGGCCAGGATTTAGCACTCAATTTCGAAATAGTCGAAGTTATATCAGAAGGTCGATATATTGCACTGAAATAACAtgattattactattattgttattattatttacaaaCTGTTTTATTTCATGCATCCTTTTGCCTATAATAACTCATCAATGCAAATATTTCCACTAAGGGTCCCCAGAGTCGTCAACATGTGTTGCATTTTTCATTGAAAGTGAAAGTTGAAACTTTGTATTTAAACAATGTGTGTGTGGTAAAATAAAATGATAATACATGAA

Function

GO: NA

KEGG:

id description
K09078 NEUROD2; neurogenic differentiation factor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1256282 lncRNA upstream 13617 69685230 ~ 69718282 (+) False G1104843
TU1256300 lncRNA upstream 36694 69683678 ~ 69695205 (+) True G1104857
TU1256302 lncRNA upstream 41676 69689362 ~ 69690223 (+) True G1104859
TU1256283 lncRNA upstream 43730 69685230 ~ 69688169 (+) True G1104843
TU1256405 lncRNA upstream 104345 69624991 ~ 69627554 (+) True G1104956
TU1256299 lncRNA downstream 51989 69787294 ~ 69788417 (+) True G1104856
TU1256303 lncRNA downstream 64587 69799892 ~ 69805316 (+) True LOC110538170
TU1256572 lncRNA downstream 135713 69871018 ~ 69871310 (+) True G1105120
TU1256281 lncRNA downstream 140948 69876253 ~ 69878388 (+) True G1104842
TU1256582 lncRNA downstream 155913 69891218 ~ 69936515 (+) True G1105129
XM_021624797.2 mRNA upstream 119644 69610799 ~ 69612255 (+) True LOC110538162
XM_036938219.1 mRNA upstream 296622 69402993 ~ 69435277 (+) True LOC110538157
XM_036938216.1 mRNA upstream 410381 69315451 ~ 69321518 (+) False LOC110538155
XM_021624807.2 mRNA downstream 64369 69799674 ~ 69819817 (+) False LOC110538170
XM_036938230.1 mRNA downstream 119475 69854780 ~ 69875030 (+) False LOC110538173
XM_036938232.1 mRNA downstream 172116 69907421 ~ 69935378 (+) False LOC110538175
XM_021624815.2 mRNA downstream 217117 69952422 ~ 69957520 (+) False LOC110538177
XR_005035128.1 mRNA downstream 217117 69952422 ~ 69957520 (+) True LOC110538177
TU1256153 other upstream 414251 69315732 ~ 69317648 (+) True LOC110538155
TU1255496 other upstream 1200038 68528281 ~ 68531861 (+) True G1104162
TU1255479 other upstream 1226604 68504041 ~ 68505295 (+) False G1104149
TU1255480 other upstream 1226604 68504041 ~ 68505295 (+) True G1104149
TU1254663 other upstream 1723422 67987694 ~ 68008477 (+) False G1103416
TU1256295 other downstream 87910 69823215 ~ 69855195 (+) True LOC110538173
TU1256653 other downstream 287403 70022708 ~ 70025363 (+) False G1105194
TU1256654 other downstream 287403 70022708 ~ 70048987 (+) True G1105194
TU1256743 other downstream 427384 70162689 ~ 70194672 (+) True G1105281
TU1256825 other downstream 589653 70324958 ~ 70327126 (+) True G1105357

Expression Profile