RNA id: XM_036938230.1


Basic Information

Item Value
RNA id XM_036938230.1
length 3210
RNA type mRNA
GC content 0.52
exon number 10
gene id LOC110538173
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 69823215 ~ 69875030 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCGTCTGAAGCGCTCCCTCTCCTTTAAGTTCCTGACGTGTTGATACCTGTTGTGAATGTTCTCCtgatgctctcctctctccctccctgcagcTCCAGCGTCTGAAGCGCTCCCTCTCCTTTAAGTTCCTGACGTGTTGATACCTGTTGTGAATGTTCTCCtgatgctctcctctctccctccctgcagcTCCAGCGTCTGAAGCGCTCCCTCTCCTTTAAGTTCCTGACGTGTTGATACCTGTTGTGAATGTTCTCCtgatgctctcctctctccctccctgcagcTCCAGCGTCTGAAGCGCTCCCTCTCCTTTAAGACCCTGATGCGCAGTAAGAGCGTGGAGAACTTCTTCCAGAGGTCCTACAGTGACGCCCGTCTCCCCCCAGACTTCATCACCGACCCGCCACCCCCCTCCCCGCCCCCTGGCTCTCCCCTCGCCAGTGAATGCTCACCCTCCCGCTCTCCGTCACTCAGCCCCaacccctccctctgctcccACTCCCCGTCTCTAAGcccctccccctcgctctcttccAAGGCCCCGCCCCCAACCCGCCCACTGACGCAGGTGAACCACTGCTTCCAGGAGCACATTTTCCGCAAGCCCACCCACTGCCAGCTCTGCAAGCACCTGATCGTGGgtaacTCTAAACAGGGTCTTCGGTGTAAAACCTGTAAGATGGGTGCTCACCTGTGGTGCACCTCAGAGTTGTCCCAGCAGCCCTGCAATGGAAAGtctgggGTCGGGGCCTTCAAGCGGAACTTCAGCTCTCCCATGCTGGTTAACGAACAGCTGGCTGTCGTCAAGGAGGTGCAGCCCACCCAAGGGGCAGGCCGGGGGCGTGGGGTGGACCCTATTTACGCAGCCCTGCGCTATGGGACGTCCCTGGCACAGATGAGCCGCTCCAGTTTTGGGAGCGTGTCCGAGTCGCCCACGCACAGCCAGggtgaaggaggagaggagggggagcagaggcagtacagcatggaggaggagatgccaCAGGAGACAGGGGATCTGCCTCCGTGTGAAAACGAGAAGGCTGAACCTGAGGGTGGGGACAGCGAGCAGCTCCAGGAGCCTGTAGAGGAAACCAGTgtgaagGTTCCCAGGCGTATTGAGGTTCACTCCATCCACACGTATGTAGCGCTCTTCAAGTTCCTGCCTCAGGAGCACAACGACCTCGGACTAGAgcCTGGTGATCGGGTGCTGGTCACTGATGATTCTAATGAAGAGTGGTGGAAGGGAAAGAGTGGAGACAAGGTGGGCTTCTTCCCTGCTAACTTCGTTCAGAGGGTGCGCCCAGGGGAGAGGGTGTGGAGGGTCACCCAGCCTGTCCCTGCCAGCCGAGGGATGGGACACATGCCAGTGAAGGAGGATCAGatCTGTGTGGGGAAGAGTGAGGACAATGAGGGTTTCCTGAAGCTGAGCAGTGGGAAGAAGAGAGGACTGGTCCCTGCTGAATCCATTGAGGAGATCTAACCTCTGTCTCAACACCagcccccagtctctctctgtccagcaccCGGTAACCTCCTTCACACACCCCTTTAAGGCCTGAGGAGGACCAGCCAGTCCGGAGGTCCTCCAACACCACCATCATGAGGCCCACCTCCCTACTAAACTGAGTGGGGAGCGTTGACAGTTCAGCTTGTGAATTCCTGGTGATGTGGAGGATGCCCCAGCCTTGTCCTTGCTGACCTTGTCTCCTCCACCCCAATGTAGCTGACAACCCAGACATGAAAGGGTTGGTTTCCCTTCCACAGTGGGTTGGCCTAGGTGTTGTGGAGGACTATCTAAGCCCCCAATGCCCCATGTTTTCCTGCTGTAATGTAACTTTGTGTATTAGTGAACTGGGTTTATCTGTAGTCCAGACCACAGGGGTACGAGTTTTAGGACTGAAGGACTGGCTGCTGTGGACTCCAGTAACTTCCCTCAGGATGGAAGGAACTTTGAGACTATTTTCTGTCTGGTgagtctggtctctctgtgtgtgatttgACCAGTTCTTTTTCACTGTCCTCTGTGGCTGGATATCATGAGGCTGAAGAATGCAGGATTAAGGCCGTCGCATAATATCCAGTCGAAAGGTGGCGCTCCGTTTCGCGCATATATAATGACTAAAACGTGTGCTGTTTCTGTCGGTTTTGGTGTTTGGCAGGGTTTTTTTTGTCTGTTCGCTCAAACAACATTTTGTATTGGGGCAAGTTGAAGTTCGGTAGCCGACGTCTACGCCCTTTCGCCTGTAATTGGTCAACTGTAGTGTTTTCAAATGAAGGTCTTCAAGGGCGTATGAGAGCACAGTCGTGCACGCACACCTAGCCGAGTTCTGCTAGGCGCAAACAGAACCTAGTATTAGTATACGTTACCGTAGTCAGGTACTTAGTCAGgagttcctgttcctgttcctggaCACTGCATGGAAGAAAACATTTGTTCTTTCTCTGATGAACTAGAACAAGCGTCACACTCCTGATGACATCATCACAGGTGGACGCCTACTATGATCATAGTAATTAATTTACGAGTTGACCGTGAAGGAGATAATTGCATGCTGAAGGATGTACTTGTTTGAATGCCCGGTGTCAGTGAGATGTTCAGGAGACTGGTGATGGTTGTAGGTGTAGGTGCTTGCATTTTCTCTCATCCTTTCGTTTggtccaccttctctctctctctctttctttctctctttcactatctctctttctctcgtctctctctccttccatctttcTCAGCTATACATTGGTCCCTTGGCTGGGATTTGACATCATCTTGATTTAGACTGGCACAAAACTTAACTGCTCTGCAAGGACGGATGGGCGGGCAGGCGGGCGACACTGGGCAGAGTACACCCTGGTCAGACCAGACAGCCAGCAGAGGACAGGACAAACTGGGTTTATTTcgacacactctctctcagatCCTGACTCACCGGCTGACTCACTAACGTTCGACCTCGCACTTGACAGGTTCCAGAAGGTCATGGATGTAAGCCCCGTCATTCTATTGTACAGCTGGTGAATCAATCAAACGCTTCAGAAAATCTGTTTTTCTATGTCCTATTTATGAAAAATACAAGCGATTCAATTAGATTTGGGCggtgaatacttacataaataattcaatgtttttttgttcTGAATAGCCTGGACTGTATAAAACATCTATGAATAGAGCCATtgataaaaaaagaaacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1256303 lncRNA upstream 49464 69799892 ~ 69805316 (+) True LOC110538170
TU1256299 lncRNA upstream 66363 69787294 ~ 69788417 (+) True G1104856
TU1256282 lncRNA upstream 136498 69685230 ~ 69718282 (+) False G1104843
TU1256300 lncRNA upstream 159575 69683678 ~ 69695205 (+) True G1104857
TU1256281 lncRNA downstream 1223 69876253 ~ 69878388 (+) True G1104842
TU1256582 lncRNA downstream 16188 69891218 ~ 69936515 (+) True G1105129
TU1256284 lncRNA downstream 38561 69913591 ~ 69934462 (+) True LOC110538175
TU1256603 lncRNA downstream 41643 69916673 ~ 69917046 (+) True G1105148
TU1256280 lncRNA downstream 61868 69936898 ~ 69937341 (+) True G1104841
XM_021624807.2 mRNA upstream 34963 69799674 ~ 69819817 (+) False LOC110538170
XM_021557684.2 mRNA upstream 119475 69730257 ~ 69735305 (+) False LOC110486238
XM_021557685.2 mRNA upstream 119475 69730531 ~ 69735305 (+) False LOC110486238
XM_036938229.1 mRNA upstream 119475 69731899 ~ 69735305 (+) True LOC110486238
XM_021624797.2 mRNA upstream 242525 69610799 ~ 69612255 (+) True LOC110538162
XM_036938232.1 mRNA downstream 32391 69907421 ~ 69935378 (+) False LOC110538175
XM_021624815.2 mRNA downstream 77392 69952422 ~ 69957520 (+) False LOC110538177
XR_005035128.1 mRNA downstream 77392 69952422 ~ 69957520 (+) True LOC110538177
XM_021626127.2 mRNA downstream 90476 69965506 ~ 69967488 (+) True LOC110539166
XM_036938243.1 mRNA downstream 169555 70044585 ~ 70048245 (+) False LOC110538185
TU1256153 other upstream 537132 69315732 ~ 69317648 (+) True LOC110538155
TU1255496 other upstream 1322919 68528281 ~ 68531861 (+) True G1104162
TU1255479 other upstream 1349485 68504041 ~ 68505295 (+) False G1104149
TU1255480 other upstream 1349485 68504041 ~ 68505295 (+) True G1104149
TU1254663 other upstream 1846303 67987694 ~ 68008477 (+) False G1103416
TU1256653 other downstream 147678 70022708 ~ 70025363 (+) False G1105194
TU1256654 other downstream 147678 70022708 ~ 70048987 (+) True G1105194
TU1256743 other downstream 287659 70162689 ~ 70194672 (+) True G1105281
TU1256825 other downstream 449928 70324958 ~ 70327126 (+) True G1105357
TU1256863 other downstream 495725 70370755 ~ 70371211 (+) True G1105393

Expression Profile