RNA id: XM_036938232.1


Basic Information

Item Value
RNA id XM_036938232.1
length 4696
RNA type mRNA
GC content 0.50
exon number 26
gene id LOC110538175
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 69907421 ~ 69935378 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATTCGCATACACTCATGCATATATAGATAGAGCTTACACACGCACAATCCTGTAGGATTTATGCATACGTGCACTCAAATCTCCCCATTTGACCTATTCTACATAATCTAGGCTAATTTGTCAATTCCATTATTGATCGGCTCTGGCATAGGCCTATTTGTTTTTTCATTTAGTGATAGATTGGCTATTTAATTCAATTGCCTGATATCGGTGAGACTGTATGCTACGAGCTGAATGGGAGATGAGAGGACGAGCGTCAGCTGTCAACCAGATTCAGTCGgtgttttttctctctcgccATAATCGTTTGTGCGTCGGTTTTCTTTTTATCTGCGCCTGTTACACTGTAACGCACTCGATGTTAATTCGGGGGAATATGTGAACATCATGCTGGCGGTGTGGTGCTTGGTCTTTGCTGCAGTGGGCGAGAGGTTTGCCGTGTCAGTTGGCAGTTATCAGGCCTCCCGCGTTACAGGCGGCGGAAGGTCTCCTTTGGTGCGGGATGCGAGTTTGTGGGATTGGTTCTCGCCAGAGGAGCGGGGAGACAGCAGCGACATTGCGGCCGAAGTCACCTATCCAAAGCGTCTGGTGCAACAGATGGAGTCGAAGGAAGAAATGTCCCATGGCTATTTGGATACCCGCGTGAAGAATACCACGGGAGGCACCTCGCCAGTCCATTTGGCCCAGAGTTGTTTCCAGGTGGAAACCTTCGGACACACCTTCACCCTGGACCTGGAGTTAAACCACAACCTCCTGTCCTCAGACTATGTGGAGCGGCACTTTCACCAAGACGGCAAACCCTCGCAGTCTAtgGGAGGGGAGCACTGCTACTACCAAGGGAGGTTGAGGGGCTTACCAGAGTCCTGGGCAGCTCTCTCCACCTGTCTTGGCTTATGtgGTATGTTTTCTGATGGGATGTTCTCTTATGGGATTGAGCCTCTTTTCGACGGGACCAATCAGACTGAGGGGGCCCACCTAGTGCGTAGGATGCCTGATGTCAGACTATCCCCAGACTGTCAAGACTGCACAGACCACAGTGAGGGGGATGGAGCCAGAGGTAATGGTGATGAGCAGATGAAGGATCCCCGGGTCAGTGAGGTGCTGAGGCGCTCTAAGAGACAGCTGCCACGCAGGCCCACCGTGCAGTCAGAGACCAAATACATCGAGCTGATGGTGGTCAACGACTATGAAATGTTTGTACAGCTGCGACGCTCCACTACCCAGGCCAGGAACTTTGCCAAAGCAGTGGTCAATATGGCTGATGCAATTTATAGGGAACAGCTGAACACACGCATCGTGCTGGTTGCCATGGAGACCTGGTCGTCGGCCAACATGGTTCCCGTGGTGACGGACCCGTTGACGACGCTGCAGAACTTCATGAAGTACAGGAAGGACAGTATTAAGGAGCAAAGTGACGTCGTGCACCTCTTCTCGGGGCGTACGTTCCAGAGCAGTCGCAGTGGGACGGCCTACACCGGAGGGGTGTGCTCTCTCACCAGAGGAGGGGGCATCAACGAGtATGGGAATGTCGGTCCTATGGCCATCACTCTGTGCCAGAGTCTGGGTCAGAACATTGGGATGAGGTGGAACAACATACGCAGCTCTGCGGgaGACTGCAGATGTCCTGATTCTTGGCTTGGTTGTATCATGGAAGACACTGGATATTACCTACCCAGAAAGTTCTCTCGATGCAGTGTTGATGAGTACATCCAGTTCTTGCTCCAGGGGGGCGGGAGCTGCCTCTTCAACAAGCCCAACAAGctGTTGGACCCTCCTGAATGTGGGAACGGCTTcgtggagacaggggaggagtgTGACTGTGGGTCTCAGCTGgAGTGTGCCCGTAGTGGAGGGGCGTGCTGTAAGAAGTGTACCCTGACCCACGATGCCATGTGCAGTAGTGGACTGTGCTGCAGTGGGTGCAGGTATGAGCTGAGAGGAGCGGTTTGCAGACAGGCTGTGAATGACTGTGACATCCCAGAGAGCTGCACAGGAGACTCCAGCcagTGCCCTCATAATGTGCACAAGCTGGATGGATACATGTGTGACACTAGTCAGGGTCGTTGTTATAGTGGTCGGTGCAGGACTCTCGACGGCCAGTGTAAGGGGCTTTGGGGCTACAATTCAGCAGACCGCTTCTGCTATGAGAAGCTGAATGCAGAGGGCACAGAGAAGGGCAACTGTGGGCGGAGTCCTGAGGACCAGGGATGGCTGCAGTGCAACAAGCCGGATGTGCTTTGTGGTTTCCTGTTCTGTATCAATATGACGGTGAAGCCAAAGTTTGGGGATCTGGAGGGGGAAGTGACCAGCCTTACAATATACCACCAGAACAAGTACCTGGACTGCCGAGGGGGCCATGTCCTGCTGGAGGATGGGTCAGACCTGGGCTACGTGGAGGACGGTACGCCGTGCGGCCCCAACATGATGTGTCTGGAGCGCCGCTGTCTCCCCGTGGCAGCCTTCAACCTCAGCACCTGCTCCGGCTCCACGCTGGGACGCACCTGCTCTGACCACGggaCATGCAGTAACGAGGTGAAGTGTATCTGTGACAGGGACCACACCGGGAAGGACTGCAGTGTCTTTGACCCCATCCCTGACCCCACGCCGCCTGCCAGCACGGAGAAGAAAGGTCCCAGTGGCACCAATATCATAATAGGGTCCATCGCAGGTGCTATTCTTCTGGCAGCTATAGTCCTAGGGGGGACAGGATGGGGATTTAAGAATATCCGAAGAGGAAGATCTGGAGGAGGataagatgtctgtctgtctgtctttgtctgtctgctcctgtctttctctcactctgtgaTGTTTCCAAGTCGGAGAAGAGGGAAAAATAACAAGTCTTCCACTCCTGTCCCGAACCTCTCCAGACCTCTTCTGTTAacatctcctctcctgtccacttcctgtctgtccaCCTGTCTATCTCCGGCCCCTCCTGGACAGTGTAGCACCTCCCACATTGCATACCAGCCAATTATATTATCCAATCAGGATAAAGTCTTTGCCACGGACAGAATGAGAAGGTTGTTGTTGGTCCCTAGAGGGGCGTCAGGGTCTTCCTGCTTTCCAGCGACTAAGTAGTATGCACTTCGGTGTCTGCGTACTGTAGTTCCCTTTCCTTCCGCTTACGACAGTCCAATGAAGAACCTGTCAACAGTGGACAAATTCAGTATGAGACATGTCTTTCCAATGCTTGTCTGGAAACACACTTCTGGCCGCTGTTTGAGATTGCTGGACTGGCCCAGACCTGCCATCTGAAAAACGATTTAAATCATAAGATGTTGTCAAAGAAACATTGATCAAAGACTCAAGTGGCCATTGGATCAGTTGAACTGCCCCTTTCAGAGAGGCCTTGTCTGGTGACTGGATGACAACCCAGATTCAGACATTATCTAGTTACAACAAGAAGAGTCCTGTATTGGGCGTGTTGTGTACAGGCCATTTCCAAAGAAGGAAGAGcaacttattgtgagaatgaCTATGAAACAAAAGCAGTAGACCGTTCAAAACATCATGGACTGATGTAGGGTTTATGTTGATTGTTAATTCTTTGTTCCTGTCTGTTGAGATGTAGGAAGGGGGAGACCCTATGGTTTTGGGATCATATTTCAAATGCAGCAGAGACCGTAACTCAGTGTTTTCAACCGTAGATCTACCAACACAACATTCCACATAGTGTTAGTTAACAGagactgtctgtatgtgtctgtattcTATTCACCACCTTCTTAAGAGGCCCAAAGTGTGTACGGTAAAGGAGGTtgaaactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgttacCAAAATTCCGGTAACTTTCCCAATATttgaaatcctggttggaagattcctggaattGTGAAGGAATTAGCAGGGAAATatggaatcctccaaccaggattcctggaaaaccagggaatgtTGAGAAAGTTACTAaaatgagtgtgtgcgtgtgagagattGAGTGAGGAAGAGAGCAGGTGAATGAGAAAAGTACTTGTCGTGTTTGGGACAGTTATGCCCTTGTTCACCGTGACACTCCTGCCAACAACACTGGTAGATAGTTTATAGATTTTTACTTCTAGAAAACGTTATCTTTCTGTTGCCTGGCTTTGTGCTCGGGAGCCAATGATAGCACACTAACAAACAAATGGTTTGTATTGAATATGTAACAACAAACTTAAACGAGCACTAGCCTACAGAATGTGAGAACACATATGCACATCtatttgtatgtacagtatgtacaagaagATAATACTGAATGTTGAATACACTGTAGGAAATTGTTTTAAAATTCAATGTTAATATTGATTCATTTAATCTGTTTCAACTAAGTATCTATCTGTCTCCTGCCATACAACTGTCCATCTCCTTTAAGCCATTCCTAGTTGTCCATCTATCTGTCTAGCAGGCACACTGCCTAGTAAACTAGCAATCTggccatctacagtgccttgcgaatgtatttggcccccttgaactttgcgaccttttgccacatttcaggcttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1256281 lncRNA upstream 29033 69876253 ~ 69878388 (+) True G1104842
TU1256572 lncRNA upstream 36111 69871018 ~ 69871310 (+) True G1105120
TU1256303 lncRNA upstream 102105 69799892 ~ 69805316 (+) True LOC110538170
TU1256299 lncRNA upstream 119004 69787294 ~ 69788417 (+) True G1104856
TU1256282 lncRNA upstream 189139 69685230 ~ 69718282 (+) False G1104843
TU1256280 lncRNA downstream 1520 69936898 ~ 69937341 (+) True G1104841
TU1256631 lncRNA downstream 40212 69975590 ~ 69976435 (+) True G1105173
TU1256658 lncRNA downstream 102030 70037408 ~ 70041331 (+) True G1105198
TU1256657 lncRNA downstream 120662 70056040 ~ 70058980 (+) True G1105197
TU1256753 lncRNA downstream 247923 70183301 ~ 70183868 (+) True G1105291
XM_036938230.1 mRNA upstream 32391 69854780 ~ 69875030 (+) False LOC110538173
XM_021624807.2 mRNA upstream 87604 69799674 ~ 69819817 (+) False LOC110538170
XM_021557684.2 mRNA upstream 172116 69730257 ~ 69735305 (+) False LOC110486238
XM_021557685.2 mRNA upstream 172116 69730531 ~ 69735305 (+) False LOC110486238
XM_036938229.1 mRNA upstream 172116 69731899 ~ 69735305 (+) True LOC110486238
XM_021624815.2 mRNA downstream 17044 69952422 ~ 69957520 (+) False LOC110538177
XR_005035128.1 mRNA downstream 17044 69952422 ~ 69957520 (+) True LOC110538177
XM_021626127.2 mRNA downstream 30128 69965506 ~ 69967488 (+) True LOC110539166
XM_036938243.1 mRNA downstream 109207 70044585 ~ 70048245 (+) False LOC110538185
XM_021624826.2 mRNA downstream 110890 70046268 ~ 70048245 (+) True LOC110538185
TU1256295 other upstream 52226 69823215 ~ 69855195 (+) True LOC110538173
TU1256153 other upstream 589773 69315732 ~ 69317648 (+) True LOC110538155
TU1255496 other upstream 1375560 68528281 ~ 68531861 (+) True G1104162
TU1255479 other upstream 1402126 68504041 ~ 68505295 (+) False G1104149
TU1255480 other upstream 1402126 68504041 ~ 68505295 (+) True G1104149
TU1256653 other downstream 87330 70022708 ~ 70025363 (+) False G1105194
TU1256654 other downstream 87330 70022708 ~ 70048987 (+) True G1105194
TU1256743 other downstream 227311 70162689 ~ 70194672 (+) True G1105281
TU1256825 other downstream 389580 70324958 ~ 70327126 (+) True G1105357
TU1256863 other downstream 435377 70370755 ~ 70371211 (+) True G1105393

Expression Profile