RNA id: XM_021624815.2


Basic Information

Item Value
RNA id XM_021624815.2
length 2781
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC110538177
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 69952422 ~ 69957520 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTGTCTATGTTCGATGGGCATTCAAATAATAAGGCTTTGTAAATAGTATAGCACAGACGTTATTACATAGTAGGCTGTGCTTTAGGTCGGCTTCCTCTGGTTTGCGCTCGAGTCAGATACCTAGGCCTATTATATGTGGCCGAGGGCTACTTTACACGTTTACAGAATTCCTCTAAAGAGGAGGGGGTGAATTGGATGCCACACACCTCCCCCTTCTGAACGAGCAGAAGCTACGTCCGCACTTCTCTCTTTCTGCATCTATAGACGGTAGCCAACGGAGAAGTCACGGCGAAATCATCCGTCTGTTTTTCATACTTTAACAAAACACCAGGGAATACGTTTATAATGGAGTCAATATTTGCGTTAATATTTCTCTGTGTAACGGGAACCCATGTAAGCAGTAGCCCGGGCCCGTTAGAAGATGTGGTTATTGATCGGTATGACATTCCAAGAGTTTGTCCCAGAGAAGTGCAAACGGGAGATTTCGTTCGTTATCATTACAATGGTACCTTCACCGACGGCAAAAAGTTCGATTCAAGTCATGAACGTGGTGCACCCTTCAGTGGGCAGGTGGGACTGGGGCGTCTCATCACTGGTCTGGACAGGGGAGTTCAGGGCATGTGTGTCAATGAGCGCAGAAAAGTTACCGTCCCCCCACACCTTGCCTATGGAAGCATAGGAGCAGgtgATGTGATCCCTGCTGACACTGTGTTGGTGTTTGACGTGGTTCTGCTCGACATCTGGAACACAGAAGACAAGGTCCAGACACGCACCCTCAGCAAACCTGAGAGCTGCAAGCGCCTCGTGGAGGCTACTGACTTCATCCGTTATCACTACAATGGCACACTGCTGAACGGCGTGCCCTTCGACTCCAGCCACTCTAGGAACGGCACCTATGACACTTACGTGGGCATGGGCTACCTCATTAAGGGTATGGACGAGGGTCTAATCGGCATGTGTGTGGGAGAGACACGCACCATCATCATCCCACCCTTCCTGGCCTATGAGGAGAAGGGATATGGCACTGTGATTCCATCCCAGGCCACCCTGGTGTTTGAGGTCTTCATGATTGACCTGTTCAACCCTAAGGATGACATCGCCGTGGTGGTCAAGGAGGTGCCTAAGACCTGCACCCGTAAAACAGTGGTGGGAGACTACATTCGTTACCACTACAACGGCACCTTCCAGGACGGCTCTGGCTTTGACACCAGCTACCAGCGCAACAGCACATATAATACCTACATTGGCATGGGCTATGTGATCCAGGGCATGGACAAGGCCCTCCAGGGGTTGTGTATTGGAGAGAAGAGGCGTGTCATCCTTCCTCCTCACATGGCCTATGGGGAGAAGGGAACTGGAGACCTCATCCCCGGCTCGGCCGTGCTGGTCTTCGACATCCACGTTATCGACTTCCACAACCCTAAGGACCTCATTGAGATCAAGGTGACCAGCAAGCCCAAGAAGTGCAACCTGACCAGTGAGGTGGACGACCTGATCCAATACCGTTACAACTGCTCCCTGATGGACGGCACCCTGCTCTACTCCTCGGACCACTATGAGAATGCCCCCATCACCACCCTGGGAGCCAACAAAGTGATTGAGGGTCTGGACGAGGGCCTGAGGGgcatgtgtgtgggagagaagagagtggTGATCGTCCCACCCCACCTGGGACATGGAGAAAATGGAGCCAAGGGTGTTCCCAGTAGTGCCGTGCTGCACTTTGAGCTGGAGCTGTTGGACCTGCAGAAGGGAGTGCCTGACGGCTACATGTTTGTGTGGCTGGGGGACAGCCCGGATCCCCTGTTCCCTGCCATGGACCTCAACAAAGATCTATCTGTCCCTCTGGAGGAGttCACAGCCTTCATAAACCTCCAGGTGGCAGAGGGCACAGGTCGCCTGAGGCCAGGGATGGATGCTGACGGCATCATCAAGGACATGTTCAACAACCAGGACCGCAACAGTGATGGCAAGATAGTGGCTGAGGAGCTCAAACTGAAGGTGGAGGAGGATTCTGACAAGGCCAGACATGAGGAGCTGTGAGGGGGTACAGTCGAGCCGGGCAGAGGGGTGCGGGGACGGAGAGAGACacaacagactgacagacagaatcTATGCAATTAGGGGGTTACCAACTAGTGGAGctcttaaatacattttattatgtAGAAAACACAGaaggttggtggcatcttaattggggaggacaggctcgtggtaatggctggaacggacgaagttgaatggtatcaaatacatggtttgatgccattccatttgctctgttccagccattattatgagccgttctcccctgaGCAGCCTCCTCCACTGGTTGAAAATAACCCAAAATGGTCCATACTTATTTAAACAAAGGACTGCTTCCATGTGTTGTAAATTGCCTTATGAAAATGTGGTCCATCTATACTTTTTATAAATAACTTATTCTCCAGTTTTGCATCATAATGTTTTCAAAAAATGTTTGACTCAGACACATTTAGCTAAAAGCACTTTCATTGAACTACCTTGTCAGCCATTTGGGGTGGTCCTTCTTCCCAGGATGCAATGCAGTTGGTTTCAAAATGGCTGATAGGAATACATGGCTGTCtcccacccctccccttcttcccaGACATGAAAATGATGTTAAGACTGTAGGTTGTATATTTTAAGAGTGGCTATTTTGTACAATACAAGATTGTGTAAGTGCCTTGCATTGTAGAATATACATCACATAATAAACAACATCTGTTTTTCTAATAAAAAcctataaaaaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1256280 lncRNA upstream 15081 69936898 ~ 69937341 (+) True G1104841
TU1256582 lncRNA upstream 15907 69891218 ~ 69936515 (+) True G1105129
TU1256284 lncRNA upstream 17960 69913591 ~ 69934462 (+) True LOC110538175
TU1256603 lncRNA upstream 35376 69916673 ~ 69917046 (+) True G1105148
TU1256281 lncRNA upstream 74034 69876253 ~ 69878388 (+) True G1104842
TU1256631 lncRNA downstream 18070 69975590 ~ 69976435 (+) True G1105173
TU1256658 lncRNA downstream 79888 70037408 ~ 70041331 (+) True G1105198
TU1256657 lncRNA downstream 98520 70056040 ~ 70058980 (+) True G1105197
TU1256753 lncRNA downstream 225781 70183301 ~ 70183868 (+) True G1105291
TU1256768 lncRNA downstream 255767 70213287 ~ 70213629 (+) True G1105304
XM_036938232.1 mRNA upstream 17044 69907421 ~ 69935378 (+) False LOC110538175
XM_036938230.1 mRNA upstream 77392 69854780 ~ 69875030 (+) False LOC110538173
XM_021624807.2 mRNA upstream 132605 69799674 ~ 69819817 (+) False LOC110538170
XM_021557684.2 mRNA upstream 217117 69730257 ~ 69735305 (+) False LOC110486238
XM_021626127.2 mRNA downstream 7986 69965506 ~ 69967488 (+) True LOC110539166
XM_036938243.1 mRNA downstream 87065 70044585 ~ 70048245 (+) False LOC110538185
XM_021624826.2 mRNA downstream 88748 70046268 ~ 70048245 (+) True LOC110538185
XR_005035317.1 mRNA downstream 424649 70382169 ~ 70382221 (+) True LOC118937908
XM_021624850.2 mRNA downstream 683444 70640964 ~ 70664813 (+) False LOC110538197
TU1256295 other upstream 97227 69823215 ~ 69855195 (+) True LOC110538173
TU1256153 other upstream 634774 69315732 ~ 69317648 (+) True LOC110538155
TU1255496 other upstream 1420561 68528281 ~ 68531861 (+) True G1104162
TU1255479 other upstream 1447127 68504041 ~ 68505295 (+) False G1104149
TU1256653 other downstream 65188 70022708 ~ 70025363 (+) False G1105194
TU1256654 other downstream 65188 70022708 ~ 70048987 (+) True G1105194
TU1256743 other downstream 205169 70162689 ~ 70194672 (+) True G1105281
TU1256825 other downstream 367438 70324958 ~ 70327126 (+) True G1105357
TU1256863 other downstream 413235 70370755 ~ 70371211 (+) True G1105393

Expression Profile