RNA id: XM_036938243.1



Basic Information


Item Value
RNA id XM_036938243.1
length 1285
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110538185
representative False

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 70044585 ~ 70048245 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGAATTACTAGTGGTAGGAATATATTAGCTAGGCCCAGCGTCATTAATGTATGGATCTGGCTAGGCCTAGCTGACAACCTCGGATACattcacagtaaaaaaaaatggcTCACCCTTCAGGCATACCAAGAAGACCATGTCAGTCAATAAGTTGCCAAGAGACTGATCATCATCATGGGCAAGAGTTGTAAAGTGGTGGTGTGTGGTCTGGCTGCCGTTGGCAAGACTGCTGTCCTGGAGCAACTGCTGTATGCCAATCATATTGCGGGCTCAGAGCCCATGGAGACCCTGGAGGATATCTATATTGGCTCCATAGAAACAGACCGTGGCACTCGAGAGCAAGTGCGCTTCTACGACACCCGGGGTCTTCGTGATGGTCTGGAGTTCCCTCGCCACTACTTCTTCTTTGCGGACGGTTTTGTTCTGGTCTACAGCATCGACAGTAAGGAGTCCTTCAAACGCATGGAGGCCCTCAAGAAAGACATTGACCGCTACCGTGATAAGAAAGAGGTGAACATAGTGGTGCTGGGCAACAAGCTAGACAtgcaggagcagaggagagtggACTCTGAAGTGGCCCAGTACTGGGCCAAGACAGAAAAGGTGCGTCTGTGGGAGGTGTCTGTGGCTGACCGGAGGACCCTCATCGAGCCTTTTGTCCACCTGGCCAGCAAGATGACCCAGCCCCAGAGCAAATCATCCTTCCCCCTCAGCCGCAATAAGAACAAGGGGAGTGGCTCTGTCGATAGCTGAGGGATTAggggggatggaagagagagtgaggattGATGAAGAATGTGAAAAAGTAGTAGGGGAAACGCAATAGACTGATTGTTAGCCTATCACAAATACAGACAATTTTATGTCTGCACAAATGTACACCGACTGAAACAAATGGTTTCATGGAGATTTTGACAGATATTTAAACTCATATTTGACCATTTAGACTGATCTTTGACGACAAGTAAATGTTGACATCAAAAGTAACGAATGGATAATCAAGAGGGTTGTTTGTATCATGGAGGATACATAAGGGATTATATTACTGTTAGTTAATCAGGAGATTTGTTACACTACTGGCATGCCATCTACTCAGATGAAATATGGAAACTATTTTAGCATGGATGATCTGAATTTTATTTTAAGTTAGAGTACATGAAACAaatccatatttatttatttttgaatcacttttttcccccaatttcgtagtatccaattattagtagttactatcttgtctcatcgctacaactcccgtacgggctcgggagagacgaaggtc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1256658 lncRNA upstream 3254 70037408 ~ 70041331 (+) True G1105198
TU1256631 lncRNA upstream 68150 69975590 ~ 69976435 (+) True G1105173
TU1256280 lncRNA upstream 107244 69936898 ~ 69937341 (+) True G1104841
TU1256582 lncRNA upstream 108070 69891218 ~ 69936515 (+) True G1105129
TU1256284 lncRNA upstream 110123 69913591 ~ 69934462 (+) True LOC110538175
TU1256657 lncRNA downstream 7795 70056040 ~ 70058980 (+) True G1105197
TU1256753 lncRNA downstream 135056 70183301 ~ 70183868 (+) True G1105291
TU1256768 lncRNA downstream 165042 70213287 ~ 70213629 (+) True G1105304
TU1256781 lncRNA downstream 191497 70239742 ~ 70239956 (+) True G1105317
TU1256786 lncRNA downstream 206839 70255084 ~ 70255358 (+) True G1105322
XM_021626127.2 mRNA upstream 77097 69965506 ~ 69967488 (+) True LOC110539166
XM_021624815.2 mRNA upstream 87065 69952422 ~ 69957520 (+) False LOC110538177
XR_005035128.1 mRNA upstream 87065 69952422 ~ 69957520 (+) True LOC110538177
XM_036938232.1 mRNA upstream 109207 69907421 ~ 69935378 (+) False LOC110538175
XM_036938230.1 mRNA upstream 169555 69854780 ~ 69875030 (+) False LOC110538173
XR_005035317.1 mRNA downstream 333924 70382169 ~ 70382221 (+) True LOC118937908
XM_021624850.2 mRNA downstream 592719 70640964 ~ 70664813 (+) False LOC110538197
XM_036938256.1 mRNA downstream 592719 70640964 ~ 70664813 (+) False LOC110538197
XM_021624849.2 mRNA downstream 592720 70640965 ~ 70664813 (+) False LOC110538197
XM_021624851.2 mRNA downstream 592720 70640965 ~ 70664813 (+) True LOC110538197
TU1256653 other upstream 19222 70022708 ~ 70025363 (+) False G1105194
TU1256295 other upstream 189390 69823215 ~ 69855195 (+) True LOC110538173
TU1256153 other upstream 726937 69315732 ~ 69317648 (+) True LOC110538155
TU1255496 other upstream 1512724 68528281 ~ 68531861 (+) True G1104162
TU1255479 other upstream 1539290 68504041 ~ 68505295 (+) False G1104149
TU1256743 other downstream 114444 70162689 ~ 70194672 (+) True G1105281
TU1256825 other downstream 276713 70324958 ~ 70327126 (+) True G1105357
TU1256863 other downstream 322510 70370755 ~ 70371211 (+) True G1105393
TU1256950 other downstream 564058 70612303 ~ 70633971 (+) True G1105467
TU1257166 other downstream 854660 70902905 ~ 70906429 (+) False G1105655

Expression Profile