RNA id: XR_005035317.1


Basic Information

Item Value
RNA id XR_005035317.1
length 53
RNA type mRNA
GC content 0.38
exon number 1
gene id LOC118937908
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 70382169 ~ 70382221 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaatgtgctcttttagtatttctccagtaggttttCTGAAGGAGAAAGCACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1256843 lncRNA upstream 33945 70347888 ~ 70348224 (+) True G1105374
TU1256842 lncRNA upstream 36448 70345476 ~ 70345721 (+) True G1105373
TU1256841 lncRNA upstream 37460 70344403 ~ 70344709 (+) True G1105372
TU1256840 lncRNA upstream 38399 70343486 ~ 70343770 (+) True G1105371
TU1256823 lncRNA upstream 57737 70318710 ~ 70324432 (+) True G1105356
TU1256916 lncRNA downstream 79022 70461243 ~ 70461603 (+) True G1105442
TU1256927 lncRNA downstream 90115 70472336 ~ 70474775 (+) True G1105450
TU1256934 lncRNA downstream 100805 70483026 ~ 70491194 (+) False G1105452
TU1256936 lncRNA downstream 101605 70483826 ~ 70484457 (+) True G1105453
TU1256932 lncRNA downstream 107444 70489665 ~ 70491194 (+) False G1105452
XM_036938243.1 mRNA upstream 333924 70044585 ~ 70048245 (+) False LOC110538185
XM_021624826.2 mRNA upstream 333924 70046268 ~ 70048245 (+) True LOC110538185
XM_021626127.2 mRNA upstream 414681 69965506 ~ 69967488 (+) True LOC110539166
XM_021624815.2 mRNA upstream 424649 69952422 ~ 69957520 (+) False LOC110538177
XR_005035128.1 mRNA upstream 424649 69952422 ~ 69957520 (+) True LOC110538177
XM_021624850.2 mRNA downstream 258743 70640964 ~ 70664813 (+) False LOC110538197
XM_036938256.1 mRNA downstream 258743 70640964 ~ 70664813 (+) False LOC110538197
XM_021624849.2 mRNA downstream 258744 70640965 ~ 70664813 (+) False LOC110538197
XM_021624851.2 mRNA downstream 258744 70640965 ~ 70664813 (+) True LOC110538197
XM_021624853.2 mRNA downstream 352018 70734239 ~ 70736353 (+) True LOC110538199
TU1256863 other upstream 10958 70370755 ~ 70371211 (+) True G1105393
TU1256825 other upstream 55043 70324958 ~ 70327126 (+) True G1105357
TU1256743 other upstream 187497 70162689 ~ 70194672 (+) True G1105281
TU1256654 other upstream 333182 70022708 ~ 70048987 (+) True G1105194
TU1256653 other upstream 356806 70022708 ~ 70025363 (+) False G1105194
TU1256950 other downstream 230082 70612303 ~ 70633971 (+) True G1105467
TU1257166 other downstream 520684 70902905 ~ 70906429 (+) False G1105655
TU1257167 other downstream 520684 70902905 ~ 70906429 (+) False G1105655
TU1257168 other downstream 520684 70902905 ~ 70906429 (+) True G1105655
TU1257763 other downstream 1559330 71941551 ~ 71942799 (+) True psmg3