RNA id: XM_021624851.2


Basic Information

Item Value
RNA id XM_021624851.2
length 3977
RNA type mRNA
GC content 0.49
exon number 21
gene id LOC110538197
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 70640964 ~ 70664813 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCTAATTTGAATCctcgagccaactaggtgaaattTCTGTCATTGTGCCCCTAAGAAAGACATTTAAACCTAATTGCTCCTttatgtcgctctggataagagcgtctgataaATAACACATTTTAACGTGAATGCCAATAATTAGATGTTATCTTTATATGAGTTGAGGGGTGCATCATGATCATCAATATTATGCATAGGTGACGTGAAGCGCAGTAGCCAAGCCTCTGATCAGCTGATATTTCGTTGAGCGCTGTGTGTGGAACAGCGTTGAAAACTGGGAGCCGGGAACGGAAGACTAGTAGCTAGCTACAACAATACTAGATATCCAGGAGGATCCCATTGATCACTGAACAGGTGCaccacactacgccatcatggggGAACTTTTCAGAAGTGAGGAGATGACTCTGGCCCAGCTCTACCTCCAATCAGAGTCTGCCTACTGCTGTGTCAGCGAATTGGGAGAGATTGGAATGGTGCAATTCCGTGATTTGAACCCAGACGTGAACGTGTTTCAGCGCAAGTTTGTCAATGAAGTGCGTCGATGTGAGGAGATGGACCGCAAGCTTCGGTTTGTGGAGAAGGAGATCAAGAAAGCCAACATTCCAATGGTGGATACGGGAGAGAACCCAGAGGTCCCCCTCCCTAGGGACATGATTGACCTGGAGGCCACTTTTGAGAAGCTGGAGAATGAGCTGAAGGAGATCAACACCAACCAGGAGGCCCTGAAGAAGAACTTCCTAGAATTGACGGAGCTCAAGCATATCCTGCGCCGCACCCAGCAATTCTTCGACGAGATGGAGGACCCCAATCTGCTGGAGGAGTCGTCGACCCTGATGGATCCCGCTGAAGTAGGGACCCGTCCTCCTCTCAGACTGGGgtttgttgctggggtgatcaGCAGGGAGCGCATCCCTACGTTTGAGAGGATGCTGTGGAGGGTTTGCCGTGGTAACGTGTTCCTGAGGCAGGCAGACATTGAAGACTCACTGGAGGACCCTGCCACGGGTGACCAGGTCTATAAGTCTGTCTTCATCATATTCTTCCAAGGAGATCAGCTGAAGACTCGGGTTAAGAAGATATGTGAAGGGTTCCGAGCGTCACTGTACCCCTGTCCAGAGACCCCCcaggagaggaaggagatggCTGCAGGGGTGGCCACCCGTATCGATGACCTGCAGATGGTGCTGAACCAGACAGAGGACCACAGACAGCGGGTCCTGCAGGCTGCAGCCAAGACCGTCAGGGTGTGGTTCATCAAGGTGAGGAAGATGAAGGCCGTCTACCACACCCTGAACCTGTGCAACATCGATGTCACCCAGAAGTGTCTGATCGCCGAGGTGTGGTGCCCCGTGTCAGACATGGACTCAATCCAGTTCGCCCTGCGGAGAGGCACGGAGAAGAGTGGTTCCACCGTCCCTTCCATCCTCAACAGGATGCAGACTAAGCAGACCCCGCCCACCTTCAACAAGACCAACAAGTTCACCTCGGGCTTCCAGAACATCGTAGACGCCTACGGTATCGGCAACTACCGCGAGATGAACCCAGcCCCATACACCATCATCACCTTCCCCTTCCTATTCGCTGTCATGTTTGGGGACCTGGGCCATGGGGTGCTCATGACCTGCGCTGCCCTCTACCTGGTCCTGAGAGAGAGCCGCCTGGTCGCCCAGAAGAACGACAACGAGATGTTCAGCATGGTGTTTGCTGGGCGCTACATCATCCTACTGATGGGCATCTTCTCGATCTACACCGGCATCATCTACAACGACTGCTTCTCCAAGTCCCTCAACCTGTTTGGCTCTGGCTGGAGCGTCAGGCCCATGTTCGACACCCGCGTTAACAACCTCACCTGGTCGTTTCAGACACTTGATGAAAACAAGGTTTTACAGTTGGACCCTGCAGTAAGAGGAGTCTTCAATGGCCCTTACCCCATTGGCATTGACCCAATCTGGAACATCGCCACCAACAAGCTGACCTTCCTCAACTCCTTCAAGATGAAGATGTCAGTGATCCTGGGGGTCATCCACATGCTGTTTGGAGTGTCTCTCAGTCTCTTCAACCACCTGTATTTCAAGAAACCCCTGAACATCTACCTGGGCTTCATCCCAGAGATTGTGTTCATGGCCAGTCTGTTTGGCTACCTGGTCATCCTGGTCTTCTATAAGTGGTTGGCCTACGACGCTCACACCTCCAGAAATGCTCCCAGTCTTCTCATCGCCTTCATCAACATGTTCCTGTTCAACTATAACGACCCCACCAACCAACCCCTCTACAGAGGACAGATGGTTATTCAGACGCTGCTGGTGTTGATAGCCCTGGCATGTGTTCCCTGTATGTTGATAGTGAAAACCCTGGTTCTGCGGCGACAGTACCTCTGGAAGAAGAACTTGGGCACCCAGAACTTTGGAGGGATCCGGGTGGGAAACGGCCCCACGGAGGACCAGGCTGAGATCATCCAGCATGACCAGCTCTCCCAGCACTCGGAGAACGACGAGCATGAGttTAACTTTGGGGACGTGGCTGTGCACCAGGCCATCCACACCATAGAATACTGTCTGGGCTGCATCTCCAACACAGCTTCCTACCTACGCCTATGGGCCCTCAGCCTGGCACACGCACAGCTGTCAGAGGTTCTGTGGACCATGGTGATGCACCTTGGCCTGTCCTCCAGGAGCTTTGGGGGTTTCGTTGTCCTGTCCATCATCTTCGGGGCCTTCGCCGTCCTCACTGTCTGCATCCTGCTCATCATGGAGGGCCTGTCTGCCTTCCTGCACGCACTGCGTCTGCATTGGGTGGAATTCCAGAATAAGTTCTACGTAGGCCAGGGCTTCAAGTTCCTCCCGTTCACCTTTGAAAGCATTCTGGAGGGAAGGTTTGAGGACTGAACACTGTCCtgaccactgctccaaaaacctCCCTGTTCCTCTTGACAGCCAATGTGATGTTGGTGTAAGGTAGACTCCACCCACCCTCGGCATTGCCACAGGAACCTGTGTGATTAACTCTGGGCTCGCTGGTCAGGATCTTGGGTAAAATAGCTCTTTCTGAAAATCTGAAGTTAATCACATCTGTATTTCATATCCTGGTGCCGTGATTGTTTTGTTTGTTCGATTAAATTatttaatgtgtttttttgttgtgaaACCTGTCCAATGATGTGTTTGAACCTCCCTATGAAAATTGCACTTCTGATCATTGTAAACGAGGACTAGCTTTCCGGTAGTCTAAAATTTAGTTATTTTACAGATTGTCATTGATACAGTAGATGTCCATGGAAAATGAGAGAAAATGGCACCAGGCTCTAATCCAGTAAAGGCTGGAGGTCTTTAAGTGTTTTTTTATGTCCCTTGTCCTTACCAACATCTCCTTCTCACGTCGCTGCTCATATTAATACACAATGTTCACCCACACATTCTCTGCAGCACATAAAATCAGACATACCTCTACTGTAAAAAAGTCTAAAGGGATTGCGTTTTACCACACAATGACTCATGCTAGCAGTTTCTTTATGCGACGCAGTGAATTTAATCTCTTAAGTATCAGAGGTAGATCTTGACGCGTCCTATAATTTTCTGCCGTTTTGACCTGATGTGTTCTATACTGACTGCGCTGTTTTGGACTACATATCTGTGATGTGCAGTGAACTATGGGTAACCTGTCTGTCACGTGTCATATTAGTGTGGAGTATTTCAGAAGTGTAGAAAGTAGCTGGATTTTCTGTGATAATCCGTGACTATGAGATTATTGGTCATTGTGTGTTGATTCGTTTTTTTGTTCCACACCTGTCTAATTAAGTGTTTACACCGTGAGTGTAGGACCGtatgaggggagagggaaggacaaACCACACAACAGGAATATGTAAAGGGGATCTGTGTATTGACATCAACTAAATCTGTATATGATGGTGGTTGCATTGAGAATCTGTCTATGTGTTTGTCATTAAACAGGAAAGAGCTGGTTAAACAAA

Function

GO: NA

KEGG:

id description
K02154 ATPeV0A, ATP6N; V-type H+-transporting ATPase subunit a

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1257049 lncRNA upstream 2488 70638042 ~ 70638477 (+) True G1105565
TU1256959 lncRNA upstream 44790 70595419 ~ 70596175 (+) True G1105476
TU1256949 lncRNA upstream 51968 70587166 ~ 70588997 (+) True G1105466
TU1257024 lncRNA upstream 55305 70585417 ~ 70585660 (+) True G1105540
TU1257023 lncRNA upstream 55673 70584966 ~ 70585292 (+) True G1105539
TU1257059 lncRNA downstream 987 70665800 ~ 70666048 (+) True G1105573
TU1257115 lncRNA downstream 96229 70761042 ~ 70774919 (+) False G1105619
TU1257119 lncRNA downstream 105660 70770473 ~ 70771516 (+) True G1105619
TU1257151 lncRNA downstream 154350 70819163 ~ 70827806 (+) True LOC110538205
TU1257176 lncRNA downstream 183675 70848488 ~ 70848715 (+) True G1105661
XR_005035317.1 mRNA upstream 258744 70382169 ~ 70382221 (+) True LOC118937908
XM_036938243.1 mRNA upstream 592720 70044585 ~ 70048245 (+) False LOC110538185
XM_021624826.2 mRNA upstream 592720 70046268 ~ 70048245 (+) True LOC110538185
XM_021626127.2 mRNA upstream 673477 69965506 ~ 69967488 (+) True LOC110539166
XR_005035128.1 mRNA upstream 683445 69952422 ~ 69957520 (+) True LOC110538177
XM_021624853.2 mRNA downstream 69426 70734239 ~ 70736353 (+) True LOC110538199
XM_021624854.2 mRNA downstream 80722 70745535 ~ 70750237 (+) True si:ch73-141c7.1
XM_021624856.2 mRNA downstream 87701 70752514 ~ 70754545 (+) True LOC110538201
XM_021624859.2 mRNA downstream 91841 70756654 ~ 70758166 (+) True LOC110538203
XM_021624862.2 mRNA downstream 142354 70807167 ~ 70819174 (+) False LOC110538205
TU1256950 other upstream 6994 70612303 ~ 70633971 (+) True G1105467
TU1256863 other upstream 269754 70370755 ~ 70371211 (+) True G1105393
TU1256825 other upstream 313839 70324958 ~ 70327126 (+) True G1105357
TU1256743 other upstream 446293 70162689 ~ 70194672 (+) True G1105281
TU1256654 other upstream 591978 70022708 ~ 70048987 (+) True G1105194
TU1257166 other downstream 238092 70902905 ~ 70906429 (+) False G1105655
TU1257167 other downstream 238092 70902905 ~ 70906429 (+) False G1105655
TU1257168 other downstream 238092 70902905 ~ 70906429 (+) True G1105655
TU1257763 other downstream 1276738 71941551 ~ 71942799 (+) True psmg3
TU1257805 other downstream 1352780 72017593 ~ 72018290 (+) True LOC110538241

Expression Profile