Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_036938260.1 |
| length | 4589 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 1 |
| gene id | LOC110538204 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 70800367 ~ 70804955 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0060070 | canonical Wnt signaling pathway | biological_process |
| GO:0008406 | gonad development | biological_process |
| GO:0007199 | G protein-coupled receptor signaling pathway coupled to cGMP nucleotide second messenger | biological_process |
| GO:0007223 | Wnt signaling pathway, calcium modulating pathway | biological_process |
| GO:0003146 | heart jogging | biological_process |
| GO:0016477 | cell migration | biological_process |
| GO:0031018 | endocrine pancreas development | biological_process |
| GO:0070654 | sensory epithelium regeneration | biological_process |
| GO:0030855 | epithelial cell differentiation | biological_process |
| GO:0007409 | axonogenesis | biological_process |
| GO:0060027 | convergent extension involved in gastrulation | biological_process |
| GO:0007420 | brain development | biological_process |
| GO:0061341 | non-canonical Wnt signaling pathway involved in heart development | biological_process |
| GO:0001944 | vasculature development | biological_process |
| GO:0001947 | heart looping | biological_process |
| GO:0032589 | neuron projection membrane | cellular_component |
| GO:0045177 | apical part of cell | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0030165 | PDZ domain binding | molecular_function |
| GO:0042813 | Wnt-activated receptor activity | molecular_function |
| GO:0017147 | Wnt-protein binding | molecular_function |
| GO:0004930 | G protein-coupled receptor activity | molecular_function |
| id | description |
|---|---|
| K02235 | FZD2; frizzled 2 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU1258890 | lncRNA | downstream | 42201 | 70752569 ~ 70758166 (-) | False | LOC110538202 |
| TU1258891 | lncRNA | downstream | 42201 | 70753861 ~ 70758166 (-) | False | LOC110538202 |
| TU1258896 | lncRNA | downstream | 42201 | 70753861 ~ 70758166 (-) | False | LOC110538202 |
| TU1258892 | lncRNA | downstream | 45831 | 70752569 ~ 70754536 (-) | False | LOC110538202 |
| TU1258877 | lncRNA | downstream | 132281 | 70667861 ~ 70668086 (-) | True | G1107222 |
| TU1258988 | lncRNA | upstream | 57219 | 70862174 ~ 70862437 (-) | True | G1107312 |
| TU1258989 | lncRNA | upstream | 57564 | 70862519 ~ 70862841 (-) | True | G1107313 |
| TU1259064 | lncRNA | upstream | 173199 | 70978154 ~ 70978376 (-) | True | G1107380 |
| TU1259065 | lncRNA | upstream | 173621 | 70978576 ~ 70978837 (-) | True | G1107381 |
| TU1259066 | lncRNA | upstream | 174245 | 70979200 ~ 70979417 (-) | True | G1107382 |
| XM_036938258.1 | mRNA | downstream | 25353 | 70757919 ~ 70775014 (-) | False | LOC110538202 |
| XM_021624852.2 | mRNA | downstream | 112560 | 70671846 ~ 70687807 (-) | True | LOC110538198 |
| XM_021624847.2 | mRNA | downstream | 166370 | 70612291 ~ 70633997 (-) | True | LOC110538196 |
| XM_021624844.2 | mRNA | downstream | 190398 | 70587166 ~ 70609969 (-) | False | LOC110538194 |
| XM_021624863.2 | mRNA | upstream | 14208 | 70819163 ~ 70827825 (-) | True | LOC110538206 |
| XM_021624864.2 | mRNA | upstream | 100159 | 70905114 ~ 70935673 (-) | True | LOC110538207 |
| XM_021624870.2 | mRNA | upstream | 205091 | 71010046 ~ 71013190 (-) | False | LOC110538211 |
| XM_021624868.2 | mRNA | upstream | 205091 | 71010046 ~ 71016433 (-) | True | LOC110538211 |
| XM_036938267.1 | mRNA | upstream | 239258 | 71044213 ~ 71069530 (-) | True | LOC110538957 |
| TU1258897 | other | downstream | 39380 | 70759915 ~ 70760987 (-) | True | LOC110538202 |
| TU1258645 | other | downstream | 562766 | 70237094 ~ 70237601 (-) | True | G1107004 |
| TU1258235 | other | downstream | 1303405 | 69496640 ~ 69496962 (-) | True | G1106634 |
| TU1258056 | other | downstream | 1631479 | 69166461 ~ 69168888 (-) | False | G1106463 |
| TU1255583 | other | downstream | 2296461 | 68495125 ~ 68503906 (-) | True | LOC110538128 |
| TU1259170 | other | upstream | 339700 | 71144655 ~ 71147165 (-) | True | G1107481 |
| TU1259263 | other | upstream | 507304 | 71312259 ~ 71313001 (-) | False | G1107536 |
| TU1259249 | other | upstream | 507583 | 71312538 ~ 71313001 (-) | False | G1107536 |
| TU1259256 | other | upstream | 507583 | 71312538 ~ 71313001 (-) | False | G1107536 |
| TU1259373 | other | upstream | 841843 | 71646798 ~ 71648363 (-) | True | nudt1 |
