RNA id: XM_021624865.2


Basic Information

Item Value
RNA id XM_021624865.2
length 975
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC110538209
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 70984731 ~ 70986552 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTCGTTCAAAAGTATGCCTTGTTTTCTGTGTTCCGTGCCACACCTGTGTTTGTGCACGAACACGCAAAAGTGTAATCGGAGTAGGCGTGACTTCAGCcaattcctcctctcctccaccagtctgggGAAACACAAATCTACTCTACTCTGCCTGACACAACTGGAGTTTTCTGAACTTAGAAGACCAGCCAAGATGCCAGAGAACGCAGAGGCCGTTTCAGCCACTCTAACCACCAACAGGAACTGTACTATAGAGCTCACCAATGTCACCACCGGTTACTGTCTCATCAACCCCAAGGTGTACATGTCCAGTGGTTTCTGCTACCACCCACCCCAGCCCACCGTCCGCACCACCAAGACAGAGGTGTGTTCCTTCACCAAGGATGACGACACAGCCACGGGCGCCGTGGGGGTCCTGACCTACGACCTTTTCCACATGCAGAGCCGCGTGTGCTCAGAACGCATGGCCATCATGTTCTCCGTGCCCTACGACTACAACTTCTACAAGAACTGGCTAGGGGTGGGCGTCTTCGAGGTGGCACGCGCCTGCGACAAGCAACTGTACAACCACATGTACAAGGAAAAGGACTTCAGCAAGTTTGTCCGATCAGAGGCCAGTGGGTCAGGGGTGGAATACAAGGCCCAACACGTAGACCTGAGGGCCACCATGTCCAATGTTGGGAAGTCCATCATTAAGGTGGAGCTCTATGATAAAATGGGGCACTAATAAGACAAGCTGGTAGCTGAGCCATTTTTCCAACTCACAGCAGGGAAACAAATTTATATTGATACATAATCACGTACTAAATATAAGAATGAATGAATCAACCAACGTAGGTGGTTAATGTTATCCAATGAATAAATCTTTATCAAATGGAAGATATTACTGTCTAATTGTTCACAATATTTGATTCTGTGTCTTTTTCTACACCTGTACATGTTTGTTTTAATAAAACGCTTAAAAATGAATTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1257252 lncRNA upstream 6151 70978373 ~ 70978580 (+) True G1105735
TU1257231 lncRNA upstream 33005 70951499 ~ 70951726 (+) True G1105715
TU1257226 lncRNA upstream 41288 70943177 ~ 70943443 (+) True G1105710
TU1257201 lncRNA upstream 84908 70899370 ~ 70899823 (+) True G1105686
TU1257200 lncRNA upstream 85748 70898719 ~ 70898983 (+) True G1105685
TU1257271 lncRNA downstream 13019 70999571 ~ 70999772 (+) True G1105751
TU1257264 lncRNA downstream 23504 71010056 ~ 71016479 (+) True G1105744
TU1257263 lncRNA downstream 59029 71045581 ~ 71046167 (+) True G1105743
TU1257286 lncRNA downstream 62250 71048802 ~ 71049028 (+) True G1105766
TU1257287 lncRNA downstream 62655 71049207 ~ 71049475 (+) True G1105767
trnaa-ugc-56 mRNA upstream 76167 70908489 ~ 70908564 (+) True trnaa-ugc-56
XM_021624862.2 mRNA upstream 165557 70807167 ~ 70819174 (+) False LOC110538205
XM_036938261.1 mRNA upstream 165557 70807167 ~ 70819174 (+) False LOC110538205
XM_036938262.1 mRNA upstream 165557 70807167 ~ 70819174 (+) False LOC110538205
XM_021624859.2 mRNA upstream 226565 70756654 ~ 70758166 (+) True LOC110538203
XM_036938264.1 mRNA downstream 574 70987126 ~ 70991795 (+) True LOC110538210
XM_036938265.1 mRNA downstream 34710 71021262 ~ 71039796 (+) False LOC110538212
XM_036938266.1 mRNA downstream 34710 71021262 ~ 71039796 (+) True LOC110538212
XM_036938268.1 mRNA downstream 104742 71091294 ~ 71147182 (+) False LOC110538213
XM_036938269.1 mRNA downstream 104742 71091294 ~ 71147182 (+) True LOC110538213
TU1257166 other upstream 78302 70902905 ~ 70906429 (+) False G1105655
TU1257167 other upstream 78302 70902905 ~ 70906429 (+) False G1105655
TU1257168 other upstream 78302 70902905 ~ 70906429 (+) True G1105655
TU1256950 other upstream 350760 70612303 ~ 70633971 (+) True G1105467
TU1256863 other upstream 613520 70370755 ~ 70371211 (+) True G1105393
TU1257763 other downstream 954999 71941551 ~ 71942799 (+) True psmg3
TU1257805 other downstream 1031041 72017593 ~ 72018290 (+) True LOC110538241
TU1261422 other downstream 2318873 73305425 ~ 73306154 (+) True G1109505
TU1261395 other downstream 2398256 73384808 ~ 73385867 (+) True LOC110538462
TU1261764 other downstream 2847091 73833643 ~ 73834606 (+) True G1109778

Expression Profile