RNA id: XM_036938330.1


Basic Information

Item Value
RNA id XM_036938330.1
length 2099
RNA type mRNA
GC content 0.51
exon number 15
gene id mgrn1b
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 73423331 ~ 73431408 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATCCATAAGTCACATGACTTCATTTAACGACTGGAATTACTTTGCCAGCCATTTTTTCATGGGAGGGGAGAAAtttgacactccccatccagagGGTTACCTATTTGGAGAAAACATGGATCTGAACTTCCTTGGAAATAGGCCTGTACAATTTCCGTACGTGACCCCGGCACCCCATGAGCCTGTGAAGACCCTGAGAAGTCTGGTCAATATCAGAAAGGACTCCCTGCGCTTGGTCAGGTACAAAGATGACACTGATGCTCCAGTAGAGGAAGGAGGGAAGCCAAAGGTTCTGTATGGTGTGGAGTTCACATTTGATGCTGATGCTCGTGTGGCTATCACCCTTTATTGCCAAGCTTTTGAGGAATTCACCAATGGGATGGCAATGTACAACCCAAAGGGCCCAGCCCTGGTTTCTGAGACTGTACACTATAAGAGGGGTGTGAGCCAACATTTCTCCCTGCCTTCTTTCAAAATCGATTTCACCGACTGGAAGGAGGAGGATCTGAACTTTGACCTGGACCGGGGTGTTTTCCCCATGGTGATCCAAGCTGTGGTGGATGAAGGGGATGATTGCTTTGGACATGCACATGTGCTGCTGGCAGCCTTTGAGAGACATGTGGATGGCAGTTTCTCCGTCAAGCCTCTGAAGCAGAAGCAAATTGTGGATCGTGTGAGCTACCTGCTGCAGGAGATCTATGGAATTGAAAACAAAAACAACCAAGAGACCAAGCCGTCGGAGGATGAGAACAGTGACAACAGCAATGAGTGTGTTGTTTGTCTGTCAGACCTCCGAGACACCATCATCCTGCCCTGCAGACACCTGTGTCTCTGCAACTCCTGTGCTGACACCCTGCGTTACCAGGCCAACAACTGTCCTATCTGCAGACTGCccttcCGAGCCTTGCTGCAGATCAGAGCTGTGAGGAAGAAGCCTGGGCCGCTGTCCCCTGTGTCTTTCAGCCCTGTACTGGCTCAGACCATGGACCATGATGAGCACTCGAGCTCAGACTCGGTTCCCCCAGGCTTTGAGCCCATCTCTCTGCTGGAGGCCCTGAACGGCCTGCACTCTGTgtccccctccatcccccccgcccccctctACGATGATATTAACTTCTCTGGGAGCCTGGTAGGGGAGGGCCGGCCGCTGGGCTCCCCAGAACACTCCGGTGACGGGGGCCTGCAGAAGGGCAAAGTCAGCAAGTCACCTGACAGCACCCTGAGGTCGCCCTCATCACCTAtccaggaggaggatgaggagaagctGTCTGAGATGTCGGACGCCCAGCCTCACACACTGCTCTCCAGCAGCCCTGCTCCCACCGAGGCCACTGCAGCCGAGGATGTACTGGAGTCCATCTCCCCAGATGATGaggacaggctgcactctggaggagagagagagatccttcaGGACTACAGCAGTGAACACAGCAGCCTGACCAAAACAGAGAGTGACCCGCCAGGGGACCTGTCTCTGCCAGGGTCATCAGAGAGCCTGAAGAGTCAGAGTACCAACTGCTCCAGCCAGCCCCTCCTGTGCCCCCCCAGCAGCCTTCACATGGAGGATGAGCAACTTGACCCCTAACCTCTGGGCCCAATGGTTCTCCCTCTCTGGCTGAGTCCCAATTCACTTTCTCGCATGTATTTGACAATGGTGGAAACTCCCTCCAGTCAATaattacaccaatccaatgcttttaaatcCATGACGGGGAGTGTGAAAGTGCACATTTAGCCTAAAGGATGAATAATTGGGACATAGCCATGGTCTCCTCCCAAGCCCATCCCTCCCCCATGATCCAGTCCCCTTGGGCCTTGTAGAAGACCACTTTCCTACTTTAGTCATCGATTCATGCCATAACTGGCATTGATTCAAAATGTGTTTGTGGTGGTCACTGCAAGGATTTACTAAAACCATACTATACCTTAACTAAAAAACAACAAGTCCTTAATTAGATTGCTTTacattcagttgaagtcggaagtttacatacaccttggccaaatacatttaaacacattttttcacagttcctgtcatttaattctagtaaaattccctgtcctaggtcagttaggatcaccacttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1261474 lncRNA upstream 11666 73392650 ~ 73411665 (+) True G1109553
TU1261443 lncRNA upstream 32990 73332894 ~ 73390341 (+) True G1109526
TU1261398 lncRNA upstream 34505 73387598 ~ 73388826 (+) True G1109483
TU1261396 lncRNA upstream 46740 73374007 ~ 73376591 (+) True LOC110538463
TU1261452 lncRNA upstream 72307 73350624 ~ 73351024 (+) True G1109535
TU1261495 lncRNA downstream 37564 73468972 ~ 73469689 (+) False G1109572
TU1261494 lncRNA downstream 39292 73470700 ~ 73471788 (+) True G1109572
TU1261518 lncRNA downstream 73206 73504614 ~ 73505170 (+) True G1109591
TU1261584 lncRNA downstream 123365 73554773 ~ 73555042 (+) True G1109636
TU1261585 lncRNA downstream 124335 73555743 ~ 73555973 (+) True G1109637
XM_021625297.2 mRNA upstream 37132 73384755 ~ 73386199 (+) False LOC110538462
XM_036938322.1 mRNA upstream 46587 73335021 ~ 73376744 (+) False LOC110538463
XM_036938323.1 mRNA upstream 46587 73356565 ~ 73376744 (+) False LOC110538463
XM_036938324.1 mRNA upstream 46587 73356565 ~ 73376744 (+) False LOC110538463
XM_021624996.2 mRNA upstream 295424 73115643 ~ 73127907 (+) False LOC110538279
XM_021625289.2 mRNA downstream 8361 73439769 ~ 73443382 (+) True LOC110538457
XM_021625288.2 mRNA downstream 28491 73459899 ~ 73462891 (+) True LOC110538456
XM_021625272.2 mRNA downstream 101869 73533277 ~ 73539888 (+) True mpg
XR_002475761.2 mRNA downstream 121900 73553308 ~ 73559544 (+) True LOC110538454
XM_021625283.2 mRNA downstream 131093 73562501 ~ 73563404 (+) True LOC110538451
TU1261395 other upstream 37464 73384808 ~ 73385867 (+) True LOC110538462
TU1261422 other upstream 117177 73305425 ~ 73306154 (+) True G1109505
TU1257805 other upstream 1405041 72017593 ~ 72018290 (+) True LOC110538241
TU1257763 other upstream 1480532 71941551 ~ 71942799 (+) True psmg3
TU1257167 other upstream 2516902 70902905 ~ 70906429 (+) False G1105655
TU1261764 other downstream 402235 73833643 ~ 73834606 (+) True G1109778
TU1261780 other downstream 414847 73846255 ~ 73846794 (+) True G1109786
TU1263295 other downstream 1528858 74960266 ~ 75048356 (+) True G1111126
TU1264041 other downstream 1987381 75418789 ~ 75423163 (+) True G1111805
TU1264215 other downstream 2313731 75745139 ~ 75745620 (+) True G1111961

Expression Profile