RNA id: TCONS_00042139



Basic Information


Item Value
RNA id TCONS_00042139
length 284
lncRNA type inter_gene
GC content 0.29
exon number 2
gene id XLOC_020413
representative True

Chromosome Information


Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 21786779 ~ 21787648 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


tagcaAACTCAATACCATAATGCAAAAAAGCTAACTtcggggtgtccaaactcggtctgtatttatttgtgtttttaccgACATTATTTCAGATCTTCTAtaagtatttttgtaaaaatgaacATCATAAAAAGATATTAAGTGTCAAATTTTGCAGTCCAAATTTTCCAAAGGTGATGCTGATGTGGCAAAGACAAGATGTCCCATTTTGAtgcctaaaataatttaaaaatactttatgttaatactttttgttttttacataagtatgttacagaaaaaat

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00042138 lncRNA upstream 19940 21669165 ~ 21766839 (+) True XLOC_020412
TCONS_00040504 lncRNA upstream 128495 21655429 ~ 21658284 (+) False XLOC_020411
TCONS_00040505 lncRNA upstream 128495 21655473 ~ 21658284 (+) True XLOC_020411
TCONS_00040493 lncRNA upstream 505427 21279721 ~ 21281352 (+) True XLOC_020405
TCONS_00042137 lncRNA upstream 645660 21134709 ~ 21141119 (+) True XLOC_020403
TCONS_00042140 lncRNA downstream 1448 21789096 ~ 21797741 (+) True XLOC_020414
TCONS_00041897 lncRNA downstream 35311 21822959 ~ 21823227 (+) True XLOC_020415
TCONS_00042141 lncRNA downstream 60638 21848286 ~ 21852131 (+) True XLOC_020416
TCONS_00041898 lncRNA downstream 112670 21900318 ~ 21901018 (+) False XLOC_020417
TCONS_00041899 lncRNA downstream 113032 21900680 ~ 21903114 (+) True XLOC_020417
TCONS_00040503 mRNA upstream 118947 21618121 ~ 21667832 (+) False XLOC_020411
TCONS_00040502 mRNA upstream 202109 21549419 ~ 21584670 (+) True XLOC_020410
TCONS_00040499 mRNA upstream 238922 21516689 ~ 21547857 (+) False XLOC_020409
TCONS_00040506 mRNA downstream 102174 21889822 ~ 21911948 (+) False XLOC_020417
TCONS_00040507 mRNA downstream 163190 21950838 ~ 21957192 (+) True XLOC_020418
TCONS_00040508 mRNA downstream 177500 21965148 ~ 21968364 (+) True XLOC_020419
TCONS_00040509 mRNA downstream 185176 21972824 ~ 21984064 (+) False XLOC_020420
TCONS_00040510 mRNA downstream 185224 21972872 ~ 21981787 (+) True XLOC_020420
TCONS_00040488 other upstream 692814 21093851 ~ 21093965 (+) True XLOC_020402
TCONS_00040475 other upstream 1634798 20151925 ~ 20151981 (+) True XLOC_020387
TCONS_00040472 other upstream 1647187 20139525 ~ 20139592 (+) True XLOC_020385
TCONS_00040470 other upstream 1993546 19793119 ~ 19793233 (+) True XLOC_020381
TCONS_00040469 other upstream 2014967 19771698 ~ 19771812 (+) True XLOC_020380
TCONS_00040522 other downstream 778526 22566174 ~ 22588719 (+) True XLOC_020427
TCONS_00040524 other downstream 1052910 22840558 ~ 22840675 (+) True XLOC_020429
TCONS_00040525 other downstream 1168084 22955732 ~ 22955849 (+) True XLOC_020430
TCONS_00040526 other downstream 1308040 23095688 ~ 23095804 (+) True XLOC_020431
TCONS_00040529 other downstream 1704678 23492326 ~ 23493332 (+) True XLOC_020436