RNA id: XM_021625231.2


Basic Information

Item Value
RNA id XM_021625231.2
length 3477
RNA type mRNA
GC content 0.47
exon number 15
gene id LOC110538416
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 74107487 ~ 74135447 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGGAGTGACGCGGATATGAAAGCTAGTTTATCCCTCTTTCCTTTGCAACGAATATTGTTTAGATTAACTAGACTAGTTAGCGATAACTAGCTAAATTATAGGGAGAAATGATTCTCACTGTTTAGAAACGGAAAGGATACCAGAAGGGGTATTTGAGCGTCCTCGGAATTCATATTTCAGGGTTGAGGCGTCATCCAAATTGGGATAACTTTGAAGAAGTTCTTTGTATTCAGGGATCCGCTGATAAGAAGACGTTAAACATGGACTGGGGAACGGATCTCTGGGACCAATATGACATCATCGACAAGCACACGCAATCCGGGCTGGAACTGGTAGAGAAGTATGTCAAGTTTGTGAAGGAGAGGACGGAGATAGAGCAGAACTATGCCAAGCAGCTGAGAAGTCTAACAAAGAAATACAATCCTAAACGAGGCTGTAAAGAGGAACAGGAATGCAGGTTCTCCAACCACCAGTCCTTCCTTGACATCCTGAATGAGATGAACGACTACGCAGGACAGAGGGAGCTGATTGCTGAGAACATGATGATGAACATCTGCATCGAACTCACCAAGTACCTGCAGGAGCTCAAGATGGAGCGCAAGacgCATCTGTCGGAGGCCAAGAAAGCCCAGCAGAGTTTGGAGAGCACCTATAAGCAGCTTGACAGTagTAAGAAACGTTTTGAGAGGGAGTGGCGGGAAGCGGACAAAGCTGCTCAATATGCCGAGAAAACGGACCAGGACATCAACGCCACAAAGGCCGACGTCGAGAAGGCCAAACAGCAGGCCAACATGAGGACACACATAGCGGAGGAGTGTAAGAACGACTACGCAGCCCAGCTGCAGAAATACAACAAGGAGCAGAGCCAGTTCTACTTCAGTGACATGCCTCTCATCTTCAACAAACTCCAGGACATGGATGAGAGGCGGGTGAGGAAGCTGGCGCAGGGCTACGTCTTGTTCTCAGACACGGAGAGGCACGTGATGCCCATTATCGGGAAGTGTCTGGAGGGCGTCACCAAAGCGGGCACTAATGTCAATGAGAGGAATGACTCCATAGTTCTTATAGAGCAGTACAAGTCAGGCTTTGAGCGTCCTGGGGACCTGGACTTTGAGGACTACAGTCAGGGCATCAACCGTGCCTCCTCAGACAGCAGCCTGGGCACCCTCGGTACACCCAAAGGCCCCCTGGAGCTGCTGGGCAAGAACAGGAGCAAACCGTTCTGGCTGTTCAGCAAGAAGAGTAAGAGGCTCACTCCAGAGAGGATCATAGTAATGCCCACGGTGACAGAGGACTTTGGCCATCTCCCCCCCGAGCAGCGCAGGAAGAGGTTACAACAGAAACTAGATGACATTGGCAAGGAGTTGCAGAAAGAAGTGGACCAGAGtgAGGCCCTGGATAAGATGAAGGATGTGTATGAGAAGAACCCCCAGATGGGAGACCCTGCCAGCCTGTCTCCCCAGATCAACCAGACAGCCCAGAACATGGAGAGACTGAGATTAGAGCTCAGCAAGTATGAGTCATGGTTGACAGAGGCAGGAAGGCGAGGGGACTCGATGCTCAGGAGAGATACGTTACCAGAGGATGCGTTGAGCTACAGGTCTCACTCCAACAACAACGAACCATACAGCCCTGATGGAACCCCCTCTGAAGAAGGCACCCCAGATCCCTCTCAGGCCATCTACGCCGAGTTTGACGACGactttgaggaggaggaggaggagcttgTCGCTCCCATCGGCCAATGTACAGCCATGTACAACTTCCCAGGTGCCAGCGAGGGGACCATCACCATGCAGGAGGGGGAGGTGTTGTCTGTAGTGGAGGAGGATAAAGGTGACGGCTGGACCAGGGTCCGCAGGGCCAACGGGAACGAGGGCTACATCCCAACATCCTACGTCAGCATCAGCCTCAGCAAGTGACCCGACATCCATCCCACCCACACGAGGCCTGAGGGAACGGCCAGTCATCACTGATGATGATTCCAAAATACTGTGGCAGCTCTCTCATGGGACCAATCAGAAAGAGAAACAAAGCACTGTGGGCGGAACCATCTGGGTGTCCATAAGGAGACTATTAGGGCCAATCGAGTCGCTTTGATTTCCTCACGGAGATGCGCACCCATGATTTCTTTCCCCTGCTGGCCAGAGAAGATGCAGTCAATTGTGCTTTTGGCTCCTCCTGGCTTGCATGTCTGTACCAGGTCACTATACTTACCACATTTTCATCGTAGTTCTTCTTGATATTATCACAGTGCAGTTGTGGTTTAGTAGTGGATATCATAGCAGGACTGATGATATAGATTAGAATGCGGCACCAACCAACATGTCCATATGCCCTCACCTCACTGTGGGAAGGCTTCTCCTTTTCACAGTGAGAGGAGGATTAGAAGTGCTGTACTGGAACATTTGACATCAGGGTCGTTTTCAGTAAGGATAAACATTTTGAAACTGGGTCAAACAGAGGTACTGAACTTGTCCAATGAGAACACAGTGCCCTACTGAACAGGAGCCAGGATTAAGAGGACGTTTATCTGACACATTATTAAGCAtaacctgctctctctcactcccatgcAGCCAGAATGTAAACTGATCACATTCTTGCTCTTCTTCATATTTGCACACAGCGTTTTGGACAAAGAACATTTGCTCAGAGAAAGGAAGTGTCTCAACACAGGTCTATGGGCACTGCATTTCAGTAGGAAAGCCCTGTTGACACAGCCACTATTCAGATCAGATATACTCACCAGTTAGCGTGACTTTATTTCCTTGTGCTCTGATGTATAAATAGATTAGCCCCCCACAAGGCCAAAGACTGACACATACTGATGGCAATAAAGAAATGTTTCAGACAATCACAGCCGTATCTTCACTGCAGCTCAGATTCAAGCCATCGACATAAATGGCCTATACGAGAGCTCTTTAATAGCTCTCGATTctgaatggtaaataatgaatTGTTTGTATTGAGAATATAATTTATTAAGTATGTGTATGTTGCTACATTTAAGAGTTAAAGTTTAAGGCATGTTTTGGTTTATATCATAGGAGTTGACTCCCGTTTGTACTTTTCCCTGCAAACACGGTGGACTCTCTGTATCCAGAGGCGAGATGGATACCAATAAATTGTTGCAGACAGAATATGTGCAACGTTAAGACGATCATATTTatgttataaaataatatattttagcCATCACTACACCACTATTGTCTTATTAGCTTTTTAACCTGATGAATAAAGATTGAGAAGTTGAGAGCAGATGTGTATCTTCGTGAGGTGAATGTGTCCATTTTGTCTGGGGTTTAATAGGCGCTCCAGTTTTGAGCCACGCCGGAATATTCCTAACGTAAAAACTCGCATGTCCAGGTGCCTTTCTGGTTgaaagcattgtgtgtgtgtgtgtatacctaaCATGCAAATGTCTTCTGTTTTTAAGACTAATAAATGTAACACACATTTCAAAGTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1261954 lncRNA upstream 3403 74103515 ~ 74104085 (+) True G1109950
TU1261951 lncRNA upstream 12104 74095154 ~ 74095384 (+) True G1109948
TU1261949 lncRNA upstream 13905 74092767 ~ 74093583 (+) True G1109946
TU1261932 lncRNA upstream 33325 74067271 ~ 74074163 (+) True G1109929
TU1261931 lncRNA upstream 34172 74066549 ~ 74073316 (+) True G1109928
TU1262056 lncRNA downstream 169098 74304545 ~ 74306737 (+) False G1110045
TU1262057 lncRNA downstream 169098 74304545 ~ 74306737 (+) True G1110045
TU1262098 lncRNA downstream 243533 74378980 ~ 74379268 (+) True G1110083
TU1262172 lncRNA downstream 359613 74495060 ~ 74498797 (+) True G1110146
TU1262180 lncRNA downstream 399142 74534589 ~ 74535016 (+) True G1110154
XM_036938393.1 mRNA upstream 5170 74096931 ~ 74102318 (+) True LOC110538417
XM_021625235.2 mRNA upstream 46817 74042618 ~ 74060671 (+) False LOC110538418
XM_021625236.2 mRNA upstream 46817 74042618 ~ 74060671 (+) True LOC110538418
XR_002475879.2 mRNA upstream 67695 74038572 ~ 74039793 (+) False LOC110539171
XM_021625242.2 mRNA upstream 72851 74004684 ~ 74034637 (+) True LOC110538423
XM_036938400.1 mRNA downstream 276293 74411740 ~ 74421010 (+) True LOC110538414
XM_036938401.1 mRNA downstream 348711 74484158 ~ 74529823 (+) True LOC110538410
XM_036938402.1 mRNA downstream 394585 74530032 ~ 74532544 (+) True LOC118937740
XM_021625222.2 mRNA downstream 410264 74545711 ~ 74551332 (+) False LOC110538412
XM_021625223.2 mRNA downstream 411774 74547221 ~ 74551332 (+) True LOC110538412
TU1261780 other upstream 260694 73846255 ~ 73846794 (+) True G1109786
TU1261764 other upstream 272882 73833643 ~ 73834606 (+) True G1109778
TU1261395 other upstream 721621 73384808 ~ 73385867 (+) True LOC110538462
TU1261422 other upstream 801334 73305425 ~ 73306154 (+) True G1109505
TU1257805 other upstream 2089198 72017593 ~ 72018290 (+) True LOC110538241
TU1263295 other downstream 824819 74960266 ~ 75048356 (+) True G1111126
TU1264041 other downstream 1283342 75418789 ~ 75423163 (+) True G1111805
TU1264215 other downstream 1609692 75745139 ~ 75745620 (+) True G1111961
TU1264225 other downstream 1615423 75750870 ~ 75753593 (+) True G1111970
TU1264251 other downstream 1648903 75784350 ~ 75786987 (+) False LOC110538360

Expression Profile