RNA id: XM_036938400.1


Basic Information

Item Value
RNA id XM_036938400.1
length 1835
RNA type mRNA
GC content 0.51
exon number 6
gene id LOC110538414
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 74411740 ~ 74421010 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAAATCAATGTAACCCCTACCCATATGTTAGGCTGCCCCACACAGTAAAACAGGGATTCATTTAGGTTCTTTTTTTTATCAATTCAGGTCAAGCAGCATTTATCAGATTAAAAATTCTGCTGGCAGTCGAGTTTGCGAGGTGCCTCGTCTTTTTTAGTAAACGATTTTATAGGACATGTGACTAAATTATCCGCTCACATGGCCGCTGTGTTTGCATGATCCGCTTTACTTTTTAAAGTCCAGTGCTCGAGCTCGCTCTGCAACAACCATCCGGAGCCGAAGACCACTAAAACGCACGACCTAACCGGACAAGCCATGGCGAGCAGTGGACAAAAAGTAGTTCTGATCACCGGTTGCTCCTCCGGCATCGGGTTACGAATCGCCGTCCTGCTGGCCAAAGATGAAAAGAAGCGTTACCATGtcattGCCACCATGCGTGACCTGAAGAAGAAGGATAAGCTGGTGGAGACAGCAGGTGATGCGTATGGGAAGACCCTCATGCTGCTGCCTCTGGACGTGTGCAGTGATGAGTCAGTCAAGCAGTGCATCAACAGTGTCAAGGACCGCCATATTGATATCCTCATCAACAATGCAGGTGTGGGCTTGTTGGGACCCGTGGAAAGCATCAGTATCGAGGACATGAAGAGGGTGTTTGAGACCAACTTCTTTGGCGTGGTGAGGATGATTAAAGAGGTCATGCCTGACATGAAGAAGAGGCGGGCGGGACACATCGTGGTCATGAGCAGTGTTATGGGTCTACAGGGTGTAGTGTTCAACGATGTCTACACTGCCTCCAAGTTCGCCATGGAGGGCTTCTGTGAGAGTATGGCTGTCCAACTGCTCAAGTTTAACGTCCATTTGTCTATGATTGAGCCAGGGCCGGTGCACACTGAGTTTGAGACGAAGATGATGGAGGACGTGGCCAAGATGGAGTACCCAGGAGCTGATGCAGACACAGTGCGCTACTTTAAAGATGTTTACCTGCCCTCCTCCAAGGATATCTTTGAGGCCATGGGCCAGACCCCAGAGGACATCGCCAAGTGTACTAAGAAGGTGATCGAGTCAAGGAACCCTCGCTTCAGGAACCTGACTAACAGCCTGTACACTCCCATCGTGGCCATGAAGTATGCCGACGAGACAGGCGGCCTGTCGGTCAACACCTTCTACAACCTGCTGTTCAACTTCGGCCCCCTCATGCACATCACCATGAGCATCCTTAAGTGCCTGACCTGCAGCTGCCTGCGCCGACGCACCATTTCACCGAACTGAGAGAGACCGGGACTTGGTATGAAAtgtaaccctattccctatattatgcatTACCAgggtgaaaagtagtgcattatatagggatagggtgccattttggacatacCCTGTGAGAAATATACAGTGGTGTAGCTCATTGACACCCAAACCTGGACCacctgggggaaggagggggcaCGTAGTTCTCGGCGAGAGAGGCCGTGAGAGAACCAGGAAAAGCTTTGGCCAGGCAACACGCACAATTGCACaaacacagacagtacagtgtgaCCTCATGCATGGGGCTAGAAGTTTTTTCTGGTCAGATCATGTGATcgggaaaaactcctggccctccTCATACATACACATGATTACACACAAACAACTTACCCACAAACACAGCCAGGCATCTCCTCCGTCCTGGTCTTTTGAGGTACTGTTGGGGCAATGacactgtctgtccatctgtccatctgtctgtccatctgcccgtctgtctgtccgtctgtccgtccgtctgtctgtctgtccgtccgtctgtatgtctgtccgtccgtccgtctgtccgtcattctgcctgcc

Function

GO:

id name namespace
GO:0006703 estrogen biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004303 estradiol 17-beta-dehydrogenase activity molecular_function

KEGG:

id description
K11150 RDH8; retinol dehydrogenase 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1262098 lncRNA upstream 32472 74378980 ~ 74379268 (+) True G1110083
TU1262056 lncRNA upstream 105003 74304545 ~ 74306737 (+) False G1110045
TU1262057 lncRNA upstream 105003 74304545 ~ 74306737 (+) True G1110045
TU1261954 lncRNA upstream 307655 74103515 ~ 74104085 (+) True G1109950
TU1261951 lncRNA upstream 316356 74095154 ~ 74095384 (+) True G1109948
TU1262172 lncRNA downstream 74050 74495060 ~ 74498797 (+) True G1110146
TU1262180 lncRNA downstream 113579 74534589 ~ 74535016 (+) True G1110154
TU1262211 lncRNA downstream 158169 74579179 ~ 74579609 (+) True G1110175
TU1262233 lncRNA downstream 184113 74605123 ~ 74606527 (+) False G1110195
TU1262234 lncRNA downstream 184113 74605123 ~ 74607679 (+) True G1110195
XM_021625228.2 mRNA upstream 276293 74107487 ~ 74135447 (+) False LOC110538416
XM_021625229.2 mRNA upstream 276293 74107487 ~ 74135447 (+) False LOC110538416
XM_021625231.2 mRNA upstream 276293 74107488 ~ 74135447 (+) False LOC110538416
XM_021625232.2 mRNA upstream 276293 74107488 ~ 74135447 (+) False LOC110538416
XM_021625230.2 mRNA upstream 276293 74118353 ~ 74135447 (+) True LOC110538416
XM_036938401.1 mRNA downstream 63148 74484158 ~ 74529823 (+) True LOC110538410
XM_036938402.1 mRNA downstream 109022 74530032 ~ 74532544 (+) True LOC118937740
XM_021625222.2 mRNA downstream 124701 74545711 ~ 74551332 (+) False LOC110538412
XM_021625223.2 mRNA downstream 126211 74547221 ~ 74551332 (+) True LOC110538412
XM_036938405.1 mRNA downstream 142894 74563904 ~ 74567209 (+) True LOC118937741
TU1261780 other upstream 564946 73846255 ~ 73846794 (+) True G1109786
TU1261764 other upstream 577134 73833643 ~ 73834606 (+) True G1109778
TU1261395 other upstream 1025873 73384808 ~ 73385867 (+) True LOC110538462
TU1261422 other upstream 1105586 73305425 ~ 73306154 (+) True G1109505
TU1257805 other upstream 2393450 72017593 ~ 72018290 (+) True LOC110538241
TU1263295 other downstream 539256 74960266 ~ 75048356 (+) True G1111126
TU1264041 other downstream 997779 75418789 ~ 75423163 (+) True G1111805
TU1264215 other downstream 1324129 75745139 ~ 75745620 (+) True G1111961
TU1264225 other downstream 1329860 75750870 ~ 75753593 (+) True G1111970
TU1264251 other downstream 1363340 75784350 ~ 75786987 (+) False LOC110538360

Expression Profile