RNA id: XM_021625198.2


Basic Information

Item Value
RNA id XM_021625198.2
length 2190
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC110538400
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 74770005 ~ 74776525 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGACGGCGTGTTCTACGAAATCTTGTTTTAATCCGCAGTTATTCACCAGCGAAAAAATTACAGACGCGCTTTTGAGGGAACAAAGAAAGGAGCTCGGGCGCCGATGACTAGAATAGCTTGAAATCCACAATTCCTCAGCCAAGATGTCAAAAAGGCCATCATATGCACCTCCCCCCACCCCAGCCCCCACAACTCAAGTGCCCAACACCCCTGGGTTTGTGGGGTACAACCCATACAGCCATCTGGCCTACAACAACTACAGGCTGGGAGGGAATACCGGCAGCAACAACAGGAATTCCTCAGGAATCACTGTTCCCAAGCCGCCCAAACCGCCAGACAAGCCGCTGATGCCCTACATGCGGTACAGCCGGAAGGTAAGCAGGAAGGTCTGGGACCAAGTCAAAGCCTCCAATCCGGATCTGAAGTTATGGGAGATTGGAAAGATTATTGGTGGCATGTGGAGGGACCTCACTGAAGAGGAGAAGCAGGATTACTTGAACGAATATGAAGCGGAAAAGATTGAGTACAACGACTCCCTGAAGGCCTACCACAACTCACCGGCTTACCTGGCCTACATCAATGCCAAGAACCGTGCCGAGGCGGCtctggaggaggagagcagacagCGGCAGACCCGCGTTGAGAAGGGAGAACCTTACATGAGCATCCAGCCTGCTGAAGACCCAGATGACTATGACGATGGGTTCTCCATGAAGCACACGGCCACCGCTCGCTTCCAGAGGAACCACCGGCTCATCAGTGACATCCTCAGTGAGATTGTGGTGCCAGATGTGCGCTCTGTCGTCACCACTGCACGCATGCAAGTCCTCAAGCGCCAGGTCCAGTCCCTCATGGTGCACCAGAGGAAGCTGGAAGCAGAGCTGCTGCAAATAGAGGACCGGCACCAGGACAAGAAGAGGAGATTCCTGGAGACGACAGACTCCTTCAACAGTGAGCTCAAACGGCTGTGCGGTCAGAAGGTGGAGGTAGACATGGAGAAGCTGGCAGCAGAGATTGCTGTGGCAGAGGAGACTGCTAGGCGGCGggcggaggagagggagaaggaagcgGCGGAGCAGGCAGAGAAGGCGGCCCAGGAACAGCAAGAGCAGCAGCAGGCAGCAGCAGCCTCTGCTTCATCTACCCTGCCCATCACTGAACAGAACAACACCACCCCACCAACCACAGAGAACAAGGAGGACCAGGACAAGTCAACCCCTATGGAGACCGAAGAGACTCCTACATCAGAGCCATCTGAGACCCATCCTGAGGCTGAGGAGGGCACACATGCTGCAGAGAAGCAGCAGGGCCCGCCGGTGGAGAGCATCACGGACGAGGGCACTAGTGACAGCACTGCCCCATCCGAGAGCAGCACCGGACCCCCTGCAGACACCCCTGCCTCAGCTGAACCTGCCCCAGAGGAacgcccagccagccagccctccCAATAACATCTCTGTAGAAGGGCACACCTCTCTCTGAGCACACCCTCCAACCTGTAGACTAGGGTCATGCTTTGTGGGCACAGTGTTGCATATCAAAAATATTAGAATGTATAGAAGTGATTTCATGGGTAGAGATGTCCATAGTTTTGTACATTCTGTGTGTTATTTGCGATGTCGTGCAACCCTGTGCCCATTTAAATATGACCCTGTGATGTTCTTCCACCATCCCCACACTCAGTTTGTGTGTTTGACATTTCTATTGATCTTATGGATTTCTGGATTCATACCACAAGCCAACCGTTCCTCTCTAGCTATTGGCGTTGATAGAACAGGGCCTAATTTATTCCATACCTAATTGACAATGGTTTTTAAATGCTGTTTTtgttgcctttttttttttttatctaacttTTAGTTAGTAATCAATATGGTGTGGACTGTTAGTTATGGATTAAATTCAGAATTCATATGAAATGGCCAGTCCTTGAATATCACCTATTATATCACAGCAAATGGATAATTTGTGAACTGTTTTACATGagctgtttgcaactgcacagcTGTGTCAAACCCTGTTGCTGTGTATCACCACTAGAGAAATGGTCAGGATGAACCTCCGATAAAACCTCATGCATTCAAATGACTGTTTTTACTTGAATTTGAGTAATTTTAGTATGCCTCTGCAATTTGCATCTTTTTTTGTACTGTCAAGCCTCTTGCCCAAATAAAAGTTATTTCTGTCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1263151 lncRNA upstream 3168 74765517 ~ 74766894 (+) True G1110993
TU1263160 lncRNA upstream 44361 74725298 ~ 74725701 (+) True G1111002
TU1263159 lncRNA upstream 46160 74723602 ~ 74723902 (+) True G1111001
TU1263156 lncRNA upstream 50790 74718989 ~ 74719272 (+) True G1110998
TU1263133 lncRNA upstream 71437 74692663 ~ 74698625 (+) True G1110984
TU1263141 lncRNA downstream 8290 74784815 ~ 74786587 (+) False G1110987
TU1263139 lncRNA downstream 9188 74785713 ~ 74786587 (+) False G1110987
TU1263140 lncRNA downstream 9188 74785713 ~ 74786587 (+) False G1110987
TU1263143 lncRNA downstream 9188 74785713 ~ 74786587 (+) True G1110987
TU1263147 lncRNA downstream 55614 74832139 ~ 74836922 (+) True G1110989
XM_021625205.2 mRNA upstream 8302 74730534 ~ 74761760 (+) True LOC110538402
XM_021625213.2 mRNA upstream 130573 74637224 ~ 74639489 (+) True LOC110538406
XM_021625210.2 mRNA upstream 137386 74623356 ~ 74632676 (+) False LOC110538405
XM_021625191.2 mRNA downstream 246 74776771 ~ 74784585 (+) True LOC110538398
XM_021625189.2 mRNA downstream 15888 74792413 ~ 74831994 (+) False LOC110538397
XM_021625188.2 mRNA downstream 15894 74792419 ~ 74831993 (+) False LOC110538397
XM_021625190.2 mRNA downstream 15903 74792428 ~ 74831993 (+) False LOC110538397
XM_036938414.1 mRNA downstream 34932 74811457 ~ 74831993 (+) True LOC110538397
TU1261780 other upstream 923268 73846255 ~ 73846794 (+) True G1109786
TU1261764 other upstream 935456 73833643 ~ 73834606 (+) True G1109778
TU1261395 other upstream 1384195 73384808 ~ 73385867 (+) True LOC110538462
TU1261422 other upstream 1463908 73305425 ~ 73306154 (+) True G1109505
TU1257805 other upstream 2751772 72017593 ~ 72018290 (+) True LOC110538241
TU1263295 other downstream 183741 74960266 ~ 75048356 (+) True G1111126
TU1264041 other downstream 642264 75418789 ~ 75423163 (+) True G1111805
TU1264215 other downstream 968614 75745139 ~ 75745620 (+) True G1111961
TU1264225 other downstream 974345 75750870 ~ 75753593 (+) True G1111970
TU1264251 other downstream 1007825 75784350 ~ 75786987 (+) False LOC110538360

Expression Profile