RNA id: XM_021625176.2


Basic Information

Item Value
RNA id XM_021625176.2
length 6020
RNA type mRNA
GC content 0.52
exon number 24
gene id LOC110538386
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 75136261 ~ 75216446 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACTGCTTTCTCCTCTGTGGCAGATGCAGAGTGCAGCAGCGCTGCATTTGTGAAGAGAACAAGGGGGAGGACACGCTGCAGTAGGAGGAGAGACTAGGAGGCTAACATTCAATGCCGTCAACAAAGTCTACCTCCCGAGCACAGTCTGCACAACCTCCTAGTGATCTATTTtcagcttttctctctctctctctctccccccctcttctaTCTCGCTCCTCCTTCTCACTCTCCTCTCGCCATTCGCTGATCTCTCATGTGGCGCTCTCAGATCTTCGCCGACGCAGTGACAGCCAGACTCTTGAGCTGACGGTGTCCATGTCTACTCTGCTTTCCAAACAGACGACTGGGGCTTTTTGGACGAGATTCACACTGCCTTTTTTTGCCTGCTATTTATTTTCCCCAGATTGACAGTTTTTCATACGTGGTGTTTTGAGAAGTCTACGTAACTGAGGGCGGTGTGTATTTTAACTTTGCTCATCTGAATGGTTCAGTGCTGGTCTTCTCGCCTCTGGCCAAACTACTTGTTTTGTTTCTTCTGTAGCCTGTGCTTGGAACATCTCTCTGGTCACCTGGAGACACTACAGTTCTGTTTGAGCCATGGAACCTCAAGGATCTCTCTCCATCAGTAGTTTCATCTCTAGAAGAGGAATTCTGGAGTTTTCTTTAAAGATCTAAGAGGGATTTCGCAGTGTTCACCTTCTCATCTAGTCCAAGCTTTTCTCTCATTTTCTGCATCTGAAACTTGCCTGGATAGTGTTTATTTTGTTTACCCATATGTATTGGAAGGACACCCTTGCACTGGCATGCTTTTAAGGCCCACCGTGCCGGGGCTGTGCGCAATGTTGCAGACCATCTATGAGACCGAGTCCTGCTTCTCCTCAGACGCAGTGTCCAGCAGTGAGCAACCTCTGGAGCTGCTGCCCCTGTCCCAAGTGTCGGCCATGCCCAGTGCTGCTGTGGAGGTGAAGACAACTCTCCCCTCGGGGATGCAGAGCCCTGTGGGCGGCAGTGAGCAGGGTGTTGGAGGTGGTCCCGTGGACCTGAGGACTGATCCCAGGCTGGGACCCCTGGGTGGAGGAGTGGACCCAGCCATGAGGGAGCAGCAACTGCAGCATGAACTGCTCCTCCTCAAGCAGCAGCAGGAGCTTCAGAAACAGCTTCTCTTCGCTGAGTTCCAGAAGCAGCATGAGGTGCTGACACGCCAGCATGAGGTTCAGCTGCAGGAGCACCTGAAGcagcagcaggagatcCTGGCGGCCAAGCGGCAGCAGGAGCTGGAGCAGAAGAGGAAGCTGGAGCAGCAGAGGCATGAGGAGCTGGAGAAACAGAGGCTGGAGCAGCAGCTCCTCATGCTACGCAACAAGGAGAAGGGCAAAGAGAGTGCCATTGCCAGTACGGAGGTGAAGCTGAAGCTCCAGGAGTTCCTCCTGAGCAAAAAAGAGCCTGGTACACCTGGCGGACTAAACCATTCCTTCCCCCAGAAATGCTGGGGGGCCCACCACACCTCTCTGGACCCCAACTCCCCCCCTCAGAGTAACACTCCGGGAACGCCGCCCTCCTACAAACTGCCCCCACTACTGGGGTCCTACGAGGGCAGGGACGATTTCCCTCTCCGGAAAACTGCCTCCGAGCCCAATCTGAAGGTGCGTTCGCGGTTAAAACAGAAGGTAGCTGAGAGGAGGAGCAGTCCTCTGCTGAGGAGGAAGGACGGGACAGTGATAAGTACCTTCAAAAAGAGAGCCATCGAGATCTCTgTGTCCTCCATGTGCAGCAGTGCCCCTGGCTCCGGGCCCAGCTCGCCCAACAGCTCCAACAGCGCCATCGCAGAGAACGGCTCCAGCGGCTCTGTCCCCAACATCCACGCAGAGCAGCTGCGGTCCCTTCACCAGACCCTTAACGCTGATGGGACAGTCAGTCCGCTGAGCCTCTACACGTCCCCCTCGCTGCCTAACATCTCCCTGGGCCTGCCAGCCAACTCGCACCTCACCGCCAATCAGAAGCTATTGCAGGAGGCGGAGAGGCAGGCCATCCAGACCATGCGTCAGGGTGGGGCTCTGACGGGCAAGTTTGTCAGCACCTCGTCCCTGCCGGCATCATGCCTGCCACCTGGGATGCAACACGACTTAGACTCCACCCAGGCCCCCAACAGCCACAGCAGTCACTCCTCCCTACTGCAGCACGTCCTCCTGCTGGAGCAGGCCCGCCAGCAGAGTGCCCTCCTCTCAGtccCCATGTATGGTCAGTCGCCGTTGGTGACGGGGGACCGGGTGTCCAACAGTATGCGCACGGTGAACAAGCTACCACGCCACCGGCCCCTGAGCCGCACACAGTCTGCACCCCTCCCCCAGAGCCCCCAGGCCCTGCAGCAGCTCGTCATGCAGCAGCAGCACCAGCACTTCCTGGAGAAGCAGAAGCAGTACCAGCTCAACAAGATTCTGTCAAAAGGGGTGGAGCTTCCTCGCCAACCGCCCACCCACcctgaggagacagaggaggagctCACAGAGACACAGGAGATGCAGGAGGAGGGGGCGGAGTCTGAGCGTCTGGGGGAGGGTCGTCCTCAGGAGCAGAGGCTCCAGAAGGAAGAGTCGGGGGAGACGTCACCCCCCTCAGAACGCCTGCTGACCCCCCTGAAGGGCGAGAGTACAGAGAGCGAcctggaggaagaggatgatgaagaCGAGGCCATCGAGCTGAGGGAGTGTGATGAGGAGGGCGTACCTTACGGCCAACATCACCTGCAACAGCTCAATGTGTTCCAGGCATCCCTGTCCATTTCGGGCATGCCCCACAGACCTCTGGGAAGGGCCCAGTCCTCCCCTGCCACTGCCAGCGTCAAGGGGGCTCCCATGGGTGAGGTTCCCATCAAGCACCTCTTCACTACAGGGTTGGTGTACGACACCTTTATGCTGAAGCACCAGTGTATGTGTGGGAACACCCACATCCACCCAGAACACGCCGGCCGCATCCAGAGTGTGTGGTCCCGGCTGCAGGAGACTGGGCTCCTGGGCCGCTGTGAGAGGATTCGGGGGAGGAAGGCCACGTTGGATGAGATCCAGACTGTGCATTCAGAATACCACACACTGCTGTATGGAACCAGTCCCCTCAACAGACAGAAACTAGACAGCAAGAAGCTCTTGGGTCCAATCAGTCAGAAGATGTATGCTGTGTTGCCCTGTGGAGGCATTGGgGTGGACAGTGACACTGTGTGGAACGAGATGCACTCCTCGGGCGCTGTCAGAATGGCTGTTGGCTGCGTCATCGAGCTGGCTTTCAAAGTGGCCGCCGGGGAACTGAAGaACGGCTTTGCCGTGGTGCGTCCACCAGGCCATCACGCTGAGGAATCCACTGCCATGGGCTTCTGCTTCTTCAACTCAGTGGCCATCACAGCCAAGCTGCTACAGCAGAAACTAGGAGTGAGCAAGGTCCTCATCGTGGACTGGGATATTCACCATGGTAACGGGACACAGCAGGCTTTTTACAACGACCCCAATGTACTTTACATTTCCATGCATCGCTACGACGATGGAAACTTCTTCCCCGGCAGTGGGGCTCCTGAAGAGGTGGGGGTTGGACCTGGTGTTGGCTTCAACACAAACATCGCTTGGACAGGGGGCGTAGAACCGCCCATGGGTGACGTGGAGTACCTGACTGCCTTCAGGACGGTGGTGATGCCCATAGCCAACGAGTTCTCCCCTGACGTGGTCCTAGTGTCCGCTGGGTTTGATGCCGTGGAGGGCCACCAGTCCCCTTTGGGAGGATACAATGTCACTGCTAAATGTTTCGGCCACCTCACCAAGCAGCTGATGAAGCTGGCGGGGGGACGTGTGGTCCTGGCGCTGGAAGGAGGTCACGACCTCACGGCCATCTGTGATGCCTCCGAGTCCTGTGTGGCGGCCCTGCTCGGCGATGAGTTGGACCCCCTGCCACAGGCTGTCCTGCAACAGAAGCCCTGTCCAAAAGCTGCTGCCTCTCTGGAGAGGGTCATCGAGATACAGAGTAAACACTGGAGCTCTCTCCAAAGGTTGGCTCCCACGGTGGGCCAGTCCTTAATGGATGCCCAGCGGAGAGAGAAGGACGAGGCCGACACGGTCACCGCCATGGCATCGCTTACCGTGGATACTGAGCAGGCCGCCACTTCCACCGTCTCCACGGAGACCAGCAGGTCTACAGAAGAGCCAATGGAAGAAGAGCCCGTCTTGTAGGAGGAAACAGAGTTGTCACGACACCTTTGTCTCCACGTCCTTCGGCACTAGCCTtctcctgtcatcctctcctctttccagcCCTCGCCTCACCTCTTTCCATTTTCTGAGGATTGATGGACTTGTGCTAGCCTCCCTATCCAACTCACTGAGGTGAGTTTGTTaaagtgtgtgtgggagaggagaggcgttacacacacacactgacctaaaGGGGGCAGCGGCGGATATGCGTGATTGGTGGAGAAGCAGGAAGAGCCGGGACCTTTTGAGGAGCCTGTGTGTCTTGCTTTTTTCTTTCAATCTTTTTTGTAAGCAGAAGGCAGTGGATCCAGGAGGGTACCTCGGTTCTGGGGCCCGAGAAGCTTTGTACATTTCTTGTCATACTTTATACTTTTCAGGAACATTAGAACTGAAAAAGCCAACAAGCAGCAAAAATATTTCAACAGCCACAAATACACTCAAACACACTCGCATTATATTATACACACTAAGTTCCCAACAGCGGAACAACAATGGGGTTGTATCAATGAATAATGCTCTTCCTTTCAGAGCATGCGTACCTCTGTTCCTATTTTGTCTGTCGTTTGGTATTCTCATGCATCTATTCAATAATCTGTTCAAAGAAGCACACAAACATATGATATGTAtatttgcatatatatatattactgtatattcctTTCACTGTATCCGATATCAGCTGTGGTTGTGGAGTGGAGGTCGAGCTGTGGATCCTGCCAAGGGGGACTTTCTGGCTGAAGGAGACATCTCTCCAATTCagtcttttcttttttttcttcaggAAGCCTCAGCTCCCTCCACTTTGTATGGGACAGAATGCATTTTGAGGTGGTTTTTACCCTTCTACTTTGTTTGGACTATCAAAAAAGGACACATACATACCCACAATCAAATTTACCGCTTGGTGCAATGGAAGCCCACGGATTGGACGAGGAAGGATTTTGTGGAATAATACTTGGATTATGAACTTTTTGTCTCACGCTTGCTGCTGCGACTGGGAGACTTGTGGTGGTCATGAGACTGGAGAAAGACGTTTTTAGAAGAACTTGGTGCCTTTATATTAAATATCCCTGTTAACACCAACTACACCACCACTTAGCAGAACACAGGACAGAAAGACAAATCCACACACTTGTTACTCTCATGTCTGTTTTGTTTGTATATTTGTTTGCTTGTTTCTTTCAAAATGCCTTAATTTCCTCCAGAGAATGCACCATTTTAGCCATCTCTGCAGATATGGGATTCTACTCCTATGTCCTCTTTCTGGGTTTGTGTAATACTCTAGGTCAAAGGTCAGTGTGGCCttaactgattttttttttttttttttgcgtccTTTATCAATTCCGACCCGTACAAATGCGGCTGACGGTATGATTGTGAGGAAATTTGAACGCTACAACGACCAACTTTTTGCCATGTCACTCACTTCCTGTCACTTGTAAATACTGCATCCTGTCCTGCTCTGGCAAACCCCTCAACCTGAGACGGTATCAATAACGAACTCATTGTTTTTCCATTTATTTAGAGAGGAAGGACTGAACTTGGTCACTTTTTTTAAACAAACgttttattttgtaaaaaaatCAAATATAAGATGTATATGAATAATGACAATAACAGTGTTAATCCAATCAAATTGGATATGAATATTATATTTGagaagagttaaaaaaaaaataataataataatgtatgctAAAGCCACCTTAAGCACACATCGTGCTGGTTTTGCAATCAATGTTTTGTCCTAAGTGCCATTTTGTtttttccacaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1263411 lncRNA upstream 34290 75128347 ~ 75128589 (+) True G1111240
TU1263293 lncRNA upstream 58125 75104466 ~ 75104754 (+) True G1111124
TU1263292 lncRNA upstream 58502 75103840 ~ 75104377 (+) True G1111123
TU1263395 lncRNA upstream 85736 75076925 ~ 75077143 (+) True G1111224
TU1263391 lncRNA upstream 91042 75071638 ~ 75071837 (+) True G1111220
TU1263422 lncRNA downstream 63356 75279802 ~ 75281277 (+) True G1111250
TU1263479 lncRNA downstream 67438 75283884 ~ 75284105 (+) True G1111306
TU1263480 lncRNA downstream 67693 75284139 ~ 75284459 (+) True G1111307
TU1263485 lncRNA downstream 71685 75288131 ~ 75294663 (+) True G1111312
TU1264031 lncRNA downstream 177052 75393498 ~ 75414066 (+) True G1111798
XM_036938417.1 mRNA upstream 59884 74960037 ~ 75102995 (+) False LOC110538388
XM_036938418.1 mRNA upstream 59884 74960037 ~ 75102995 (+) False LOC110538388
XM_036938419.1 mRNA upstream 59884 74960037 ~ 75102995 (+) False LOC110538388
XM_036938420.1 mRNA upstream 59884 74960037 ~ 75102995 (+) True LOC110538388
XR_002475749.2 mRNA upstream 114172 75038342 ~ 75048707 (+) True LOC110538390
XM_036938422.1 mRNA downstream 5405 75221851 ~ 75228404 (+) True LOC110538385
XM_021625172.2 mRNA downstream 14556 75231002 ~ 75233547 (+) True LOC110538384
XM_036938423.1 mRNA downstream 20480 75236926 ~ 75279542 (+) False LOC110538383
XM_036938424.1 mRNA downstream 20480 75236926 ~ 75279542 (+) False LOC110538383
XM_036938426.1 mRNA downstream 20480 75236926 ~ 75279542 (+) False LOC110538383
TU1263295 other upstream 114523 74960266 ~ 75048356 (+) True G1111126
TU1261780 other upstream 1316085 73846255 ~ 73846794 (+) True G1109786
TU1261764 other upstream 1328273 73833643 ~ 73834606 (+) True G1109778
TU1261395 other upstream 1777012 73384808 ~ 73385867 (+) True LOC110538462
TU1261422 other upstream 1856725 73305425 ~ 73306154 (+) True G1109505
TU1264041 other downstream 202343 75418789 ~ 75423163 (+) True G1111805
TU1264215 other downstream 528693 75745139 ~ 75745620 (+) True G1111961
TU1264225 other downstream 534424 75750870 ~ 75753593 (+) True G1111970
TU1264251 other downstream 567904 75784350 ~ 75786987 (+) False LOC110538360
TU1264248 other downstream 571090 75787536 ~ 75788291 (+) False LOC110538360

Expression Profile