RNA id: XM_036938427.1


Basic Information

Item Value
RNA id XM_036938427.1
length 4274
RNA type mRNA
GC content 0.56
exon number 16
gene id LOC110538383
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 75236926 ~ 75279542 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGTCTGCCCGCTATTTCTCCTCCCTGCCTCTGATGATAACCTCTGTATCGGCTGTCAGACGACtctgtgggagggggagaggagagagcgagggccAGAAGAGCAGTGTGTAGGGTACTCTTCAACTCTTGGCTTCAACCTCCCAGAAAGATGCACTATATTAATTTACAACACGGCTGTAACCGGCCTTGTATTTCCTCCCAAGGAGAAGAGCACGGAACGGAAACTGACTTGCTCCAGCTCAAACTCCAGCAGAGACGGACCCGTGAGGAACTGGTCAGCCAGGGGATCATGCCACcactGAAAAGTCCAGCTGCCTTCCACGAACAGAGACGAAGTTTAGAGCGAGCGCGGaCTGAAGACTACCTAAAGAGGAAGATCCGAAGTCGGCCGGAGAGGTCGGAGCTGGTCAGGATGCACATTCTGGAGGATCACGTGCCTGATGGTTGTTGGCTGGCTAACccgctgtgtgctgtgtgttcaGAGACGTCGGTGGAACCCTCCCTCCAGGCCAAACAACTGCAGCTGAAGAGGGCCCGTCTGGCTGACGACCTCAACGACAAGATCTCCCACCGGCCCGGCCCCATGGAGCTCATTCACAAGAACATCCTGCCTGTACACAGCAGCATCAAACAGGCCATCATAGagACAGACTTCCCCAAGGTTGCTGGGGAGATATCCTCCTTTGATGAGGACAGTAGTGATACTCTCTCTCCTGAGCAGCCCATTGGTCAGGAGTCTCCGCTGGGCCACGGCCCTCTGCCCTCTCCCCCTGACGCCCTAGCTTGCAACAGCACCCCCACACAGTTTCTCACTCAGGTTCCTCCgccaccccctcctcttcctcccttccatGGGCCCTGCCAACCAGTGAAGTTGAGCAATGGGACAGCAGTTCTGAGAACCGGCCCTGCACTGATCAAGTTCCAGCCAAAGCCCACCTCAGAACGCCCCCCTCAGCGATCCAAGAAGCCCAAGGACAACAAGCCCAAGGTGAGGAAGCTGAAGTACCACCAGTACATCCCCCCGGACCAGAAGGCCGACCACGAGCCGCCCCCTCAGCTGGACTCCACCTACGCCAAGATCCTCCACCAGCAGCAGCTCTTCCTCCAGCTGCAGATCCTCAACCAGCAGCAGCAACACTACAACTACCACACCATCCTTCCTGCACCACccaaacCACTAACAGATCAACCACCTCCCACCAATGGCCCCTCTCCTTCTCCGGCCGTACCCGCCCCCTCGACATCCTCCTCCAGTCAAAGTGCACCAAGCCGGCAGAATGTCACACATGTAGGAGGGGCCACACTAGGTTGTTTGCCTCCTAACCTGGACGACCTGAAGGTGGCTGAACTGAAGCATGAGCTCAAACTGCGGAGCTTGCCTGTATCAGGCACCAAGAATGACCTCATCGAGCGGTTGAGGAACTACCAGGCTCAGCAGAAcagtcgtggtggtggtagtgcaACAACTACAACAgcagggggtgccacagggtctGGGGCCGGAGCTTCCAAAACCAACCacccaacacaacaacaacaaaaacaactactactactacaacaacagcaACTTTCCCAACACCAGGCCCTGTCCTCTGTGGGCCACCAATCAGGAGAAGCAGGTGTGGTAACCTTGGCAACCTTCCCGTTCATGACCACTGCTCCACAGCAGATCATGCACTTTGGCAGCACTAGCTCCTCCCCGCCAGTCTCTCCTGCCCCCTCGGACCGCTCGCTAGCTGGGATGAGTCCAGACGAGACGAGCTGTAATGGAGACTCATTTGGGGAGATGGTAAGCTCTCCACTCACCCAGCTaagcctccatccctccccccagCACCTTGGCACTATCAAAGAGGAGTTGAGCGGCTCGGCCCCAACAGCCTGCCAGTTCTCCATGGCTTCTCTGCAGAAACGCTTGCAAGTAGCACCCCCGTCTGTGAACAAGGACCAGATGCTGCAGGAGAAGGACAAGCAGATCGAGGCGCTGACGTGCATGCTAAGACAGAAACAGCGGCTGGTGGAGACCCTGCGCGTCCAGCTGGAACAGGGCAAGAGAGGGGGCCGGGACGCCCCCCCAGAACCCCTGGGCCTTGTCAGGGTGAAGGAAGAGCCCCCAGACATCCCCAGCATCCCCTCCACATTTTGCCCCATTGCCCGCTCCCCAACTCCTTCCCAGTGCCACATGGAGGTCACCAAGATGACCATCAAGCAGGAGGTCGGGGATGTGGAAGAGGCCGTGGAGCCGTCCTTGGAAGCCCCACCTCAGCAGGTGCAGCTGGAGCAGATCCAGGCGCAGCAGCGGTCGCAGCTCGAGCAGCTGAAGCTACAGCAGATGCAGCAGATCAACGCGCTGCAGCTGGCACAGCAGCAGGCCTTGCAGCAGCTGCTCCTACAGCAGAACCAGCAGAATCTGCAGAAACACCGCTCACAGCAGAGGAAGAAGAAGTCCCACAAGCAACAGCtcaagcagcagcagcaacagctaCTGTcccaacaacaacagcagatACAATCAAAGAACCAACAGCTGTTACAGTCAAAGCATCAACATCAGCAGATATTGCaggcacaacaacaacaacagcagctgaAGTCACAACAGGTGTCTCAGATGTTCCTCAATCAGCAGTCGCGCTCCACCACTTCCTTCCCCTTGGATCTCCTCAAGACACACTCCACACCTACCCTGGTGACAGACAGCAACGGCAACCATTTCCTCATCGCACTGACCAATCACTGTGCCGAGAGCCAAGGGAGTGAAATGCCACAAGGCACTCCACAGGGCAAAGCATCCAATCGCATCATACTGCAGAGACTGCAGTCAACTCCCACCAAGCTGCCCAGCCAATCCCCTCTTCAGTTGTCCAGCAGTGACACCCAATCAAAACCGAAAACTCAACCAGGCCTCGTGAAACAGCCAACCAGAAAGGGACAGAAGGCGGGGCTGCAGGTGTCAACCAATCACTCCCCAGGGGTCGCGCTCTCCTTCTCTGCCCCGCCCAATCTCCAGCCTTTCTTCCCCAATGATGACTCCTCCCCTTCTGAAAAAgacacctccccctctcctccagctcaAACAGAGGATTTGAGTCCAGGTCTTGACCATGAACCCCTGTTCAGCCCTCCTTCTCCCAAACAAACGCCCTCCCCTAACCCACCGGATGACAAGGATAATGGTTCCACCCAGCATATGGACGACCTCTTCGACATCCTGATTCAGACAGGAGaaaTCTCAGCCACCTTCAAACCAGCGCCCGACCCTTCCCTGGCGCGATTGCGCCCCAACACCCCTTCCCCTTCCCGCTCTCaggccccctcccctctccagctTCAACTCCACTTTTCGCCCCCCACCCCTCCCGAACCCGAGACCCCCAAGCCGAGCCCAGGGGAAGAGGAGCTGCAGGCGCCGGCCACCGATGATCAGGACGTAAGCAACACAGGAAGTGGACGTCTGGAGGACTTCCTGGAGAGCACCACGGGCAAACCCCTCCTGGGAGTGGAGCCTGGCGGGCCCCTGACCCTGATTGACGACCTTCACAGTCAAATGCTGAGCACCCCCAGCATCCTGGACCACACATCCTCGCCCATGGACACCTATGAGCTGTCGGGCTACACGGCCAACCCCCCTGGCCTGAACTTCGGAGACCATGCCCTGGACAGCATGGATTGGCTGGATATCACCATGGGAGGGGCGAGCAACGAGATTGCAGGGCTCGCCCCACTGGGTCCCCTGGGCCCCCACACTCCCCCCAGCGTCTTCTCAGCAGACTTTCTGGACAGTTCAGACCTGCAGCTCCACTGGGACTCCTGCTTATAGCCCTGGACAGTCTTAGTGTCATCCACACGGCTGGATGCTGGTGTTACGTTGTcaaactctttctctcttttctcaacGTACGGTACAACGACTCAAAAACACACGGGCTCTACTGCACGCTGAACTCAGTCCCTCTTACTGAATAACACTTTGATAGATTTCTTATGTATACCCATACGTTCTATAAGGCAGGCCCTCTTACACACGTAGCTCATACAGTAATACCTTTGTTAACAAACCCTGCGGACTGTAGTTGATGATGCTCCTTCATCTGAGCCAGTCAGCAGCTTACCGGAGCCACCCATCTAGACTATTGTCTACGTTTATTATTGCCCTTAGTAGTATTAGGATGGTAATAGTGTGGAGATATTGTAACAATGTTGAACCAGTAATGTGAGAACAAGACGATAATCACATCTGTCTAGCAGCTTTAGGGTTAAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1263459 lncRNA upstream 60906 75198303 ~ 75198576 (+) True G1111287
TU1263456 lncRNA upstream 69524 75189725 ~ 75189958 (+) True G1111284
TU1263447 lncRNA upstream 79711 75179572 ~ 75179771 (+) True G1111275
TU1263439 lncRNA upstream 88764 75170500 ~ 75170718 (+) True G1111267
TU1263411 lncRNA upstream 130893 75128347 ~ 75128589 (+) True G1111240
TU1263422 lncRNA downstream 260 75279802 ~ 75281277 (+) True G1111250
TU1263479 lncRNA downstream 4342 75283884 ~ 75284105 (+) True G1111306
TU1263480 lncRNA downstream 4597 75284139 ~ 75284459 (+) True G1111307
TU1263485 lncRNA downstream 8589 75288131 ~ 75294663 (+) True G1111312
TU1264031 lncRNA downstream 113956 75393498 ~ 75414066 (+) True G1111798
XM_021625172.2 mRNA upstream 25935 75231002 ~ 75233547 (+) True LOC110538384
XM_036938422.1 mRNA upstream 31078 75221851 ~ 75228404 (+) True LOC110538385
XM_021625175.2 mRNA upstream 43036 75162878 ~ 75216446 (+) False LOC110538386
XM_021625157.2 mRNA downstream 164446 75443988 ~ 75463480 (+) False LOC110538378
XM_036938434.1 mRNA downstream 164447 75443989 ~ 75463480 (+) False LOC110538378
XM_021625158.2 mRNA downstream 164561 75444103 ~ 75463480 (+) False LOC110538378
XM_036938435.1 mRNA downstream 164569 75444111 ~ 75463480 (+) True LOC110538378
XM_036938445.1 mRNA downstream 231457 75510999 ~ 75517780 (+) True LOC110538377
TU1263295 other upstream 211126 74960266 ~ 75048356 (+) True G1111126
TU1261780 other upstream 1412688 73846255 ~ 73846794 (+) True G1109786
TU1261764 other upstream 1424876 73833643 ~ 73834606 (+) True G1109778
TU1261395 other upstream 1873615 73384808 ~ 73385867 (+) True LOC110538462
TU1261422 other upstream 1953328 73305425 ~ 73306154 (+) True G1109505
TU1264041 other downstream 139247 75418789 ~ 75423163 (+) True G1111805
TU1264215 other downstream 465597 75745139 ~ 75745620 (+) True G1111961
TU1264225 other downstream 471328 75750870 ~ 75753593 (+) True G1111970
TU1264251 other downstream 504808 75784350 ~ 75786987 (+) False LOC110538360
TU1264248 other downstream 507994 75787536 ~ 75788291 (+) False LOC110538360

Expression Profile