RNA id: XM_021625161.2



Basic Information


Item Value
RNA id XM_021625161.2
length 2058
RNA type mRNA
GC content 0.40
exon number 6
gene id desi1a
representative True

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 75431549 ~ 75434649 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAAGTTCAGATGCGAGGAGCTGTAGTTGGGGATTTGATAGAGAATATCATTGCAatgcttttttaaattttataACAGAGACATTCTTCCACAGAACCTCTACAGTGCTATGTGGACGCATGGAGGCGCTGATGCACTACCAAGCTCATGAGATGCCAATCTGCAATTTTATGGGGGACAACTGTCTCTGACAGCCAGGGTACTTGTAGATTGTAATCAGACATCTAAATATCTAACGTCATAGGTACAACGTTCAGGTAATTTAGCTGATAATATAATCTCATTTTTCAGTAGACAGCAACCTTGCAAAACCagcagtcagtagaaaggcaagCTAACCGCAAAATAGCTAACGTTACtgttagcttagctagctaacataaacaCATATTTGGGGGTTTAACGTAATGGATAAAAAtgacacaacaacatacagtgtaCAACTGTATATATACGACCTGTCAAGAGGAATGGCTCGCAATCTCAGCCCAATCATGTTAGGAAAACAACTTGATGGCATTTGGCACTCAGCCATTGTGGTTTATGGAGACGAGTTCTACTTTGGAGGAGTGGGTATTTCCAGCTGCTCACCGGGGGGAACAATGCTTGGTTCCCCAGACACTGTGGTGGAATTGGGAAACACAGAGGTGACAGAGGAAATCTTCATGGACTACCTGTCCTCGCtaggagagaatacatacagAGGTGACAAGTATAGGTTGTTTGAGCACAACTGTAACACCTTCACTAATGAGGTGGCCCAGTTCTTAACAGGCCGGAAGATCCCTTCTTACATCACAGACCTGCCCTCTGAAGTGCTCTCCACACCCTTTGGTCAGATACTCCGGCCTATACTGGACTCCATCCACATCGCTCCTCCTGGGGGGAACATCATCAACGGTCGCCACAGCTAAACTGCCTGAACTGCACACAGTAGTATTTAGACATGTTCTAATTTACATTTTCAAAATGGAGGTGGGTTATTGATGAAACCGTGGAGGGTGAATCTCAGTGAGTCTAGTCAGTCACACTGCTTTTGTACTGCGTATGCTTGGTTTTAGTATGATTGTTTTGTAACTCCCCACCAGCAATGCTCTTGCCTTTtgtatgtttaaaaaaatgttgctTCAGTTTCCAGTTTTTGTTTACGGACCTTCCTTATTGCCTCTAATGGTATGATCCTGCACAACATGAACTTTCTCACAAATCTTCCAATATCATCAATATGATTTATAAGAAGGTTAGCATGTATCTCAAGTCAGCATTTCAGCATGACTTCCAATGAACTACTCCACTTTCCACCAGATGGTGTGTGCTATATACACCTCTATGCCTTCACCTCTCTCACCTTAGTGTTAATGATGCTGATAGTGTGATATGAAGGATGAATGCTGAAGTGCACAAAATCTGCATTAGTTCTCTGGATGAAGAAACAGACATCTCAGAAATGTAATTTATTATGGAAAAGTTTGTACAattttggggtcaagtttgggATCAAATCATACATATTCTTGTATCATTTTCATTGGGCCATCAGTAGGAGCAATAACTCTTCACATATCTATACTTACTAGACTAGGCATGAAACGTGTAAAGTCCTTTTATTAAATGCACGTATTCACTGCATCTCCTGGCACTGGTTAACTATAGCGTCATTCAGTAGAACAGTACAGTAAACTGTATGTTCTGTAAAAGACAGCACCTCTGGTATCGCATCAGACAGGTAATTACAGCATAGCATGTTTCATAAAAAGAATGACCACAAATAGGTGCTTGTATGTTGAAGGAGACAAGGCCCTTCACATTGGTATGTTGCTCACGTAACCACCTTCAACAATCAACCTGACCAATGAAATGTATTGTACACCTCatccttattttatttttttttttttttcaggatCAGTTGCTGGCTGCTAAATGTAATGATTTCAGTAGATATTTATGAATACTATATTAGTTATGTATGGTTATTTATGTATGGATGATATTGTTTGCACATTGTTTGCTTGTTTTGTAATTGTATCTAAATAAAGCCATTCACTCCAAATTTTA

Function


GO: NA

KEGG:

id description
K22762 DESI1, PPPDE2; desumoylating isopeptidase 1

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1264891 lncRNA downstream 3478 75409453 ~ 75428071 (-) True G1112517
TU1263951 lncRNA downstream 138078 75288118 ~ 75293471 (-) True LOC110538381
TU1263945 lncRNA downstream 144608 75286712 ~ 75286941 (-) True G1111731
TU1263940 lncRNA downstream 150541 75279160 ~ 75281008 (-) True G1111726
TU1263939 lncRNA downstream 155605 75275510 ~ 75275944 (-) True G1111725
TU1264933 lncRNA upstream 53296 75487945 ~ 75491023 (-) True G1112553
TU1264943 lncRNA upstream 94712 75529361 ~ 75529671 (-) True G1112562
TU1264944 lncRNA upstream 95168 75529817 ~ 75530104 (-) True G1112563
TU1264854 lncRNA upstream 99623 75534272 ~ 75534985 (-) True rbx1
TU1264946 lncRNA upstream 104790 75539439 ~ 75539655 (-) True G1112565
XM_036938431.1 mRNA downstream 65287 75291945 ~ 75366262 (-) False LOC110538381
XM_036938432.1 mRNA downstream 65287 75291945 ~ 75366262 (-) False LOC110538381
XM_036938433.1 mRNA downstream 65287 75291945 ~ 75366262 (-) False LOC110538381
XR_002475747.2 mRNA downstream 213573 75217568 ~ 75217976 (-) False LOC110538387
XM_021625182.2 mRNA downstream 318250 75104470 ~ 75113299 (-) True LOC110538389
XM_021625150.2 mRNA upstream 30438 75465087 ~ 75500135 (-) False LOC110538375
XM_036938436.1 mRNA upstream 30438 75465087 ~ 75500135 (-) False LOC110538375
XM_036938438.1 mRNA upstream 30438 75465087 ~ 75500135 (-) False LOC110538375
XM_036938439.1 mRNA upstream 30438 75465087 ~ 75500135 (-) False LOC110538375
XM_036938440.1 mRNA upstream 30438 75465087 ~ 75500135 (-) False LOC110538375
TU1263884 other downstream 241118 75190185 ~ 75190431 (-) True G1111672
TU1263648 other downstream 550742 74880498 ~ 74880807 (-) True G1111451
TU1263616 other downstream 606959 74817975 ~ 74824590 (-) True G1111424
TU1263089 other downstream 780786 74650283 ~ 74650763 (-) True G1110941
TU1262811 other downstream 1226358 74204221 ~ 74205191 (-) True G1110701
TU1265090 other upstream 361801 75796450 ~ 75796798 (-) True G1112697
TU1265447 other upstream 946279 76380928 ~ 76381727 (-) True G1112997
TU1265467 other upstream 978291 76412940 ~ 76414211 (-) True G1113013
TU1265478 other upstream 993899 76428548 ~ 76433570 (-) True LOC110538323
TU1265503 other upstream 1049723 76484372 ~ 76485285 (-) True G1113043

Expression Profile


XM_021625161.2 Expression in all Baseline Samples

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XM_021625161.2 Expression in each Bioproject

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XM_021625161.2 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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