RNA id: TCONS_00040519


Basic Information

Item Value
RNA id TCONS_00040519
length 2317
RNA type mRNA
GC content 0.52
exon number 7
gene id XLOC_020425
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 22417751 ~ 22430191 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGAGCCGGTGAAGTCCTTCAAGAAGAGTCAGCGGTGGCCGGAGCCTGGTGAGCCCGTCTGCGTGATGTGCGGCCGATACGGCGAATACATCTGCGACAAAACCGACAACGACATCTGCAGCCTCGAGTGCAAAGCCGCTCACCTGGCCGCAGTCTGCGCAGACTTCGGCGACAAACTctttaataacaaaaacacacCGGAGAGCTCTGAAAATACAAAGAGTTATTCCTACAAGCAGGACGCTTTTATTTCTGAGTTGACGGAGGAGCAGATAGAGCGGGTTAAAGCCGAGCTGGGGATCGTGAGCGTGGGCACGGAGGTCTGCAGGCCTGTCATTGAGTTCCAGCACTGTCGGTTCCCCACTGTGCTTGAGAGGAATCTGAAGGCGGCCGGGTATGAGGCGCCCACACCGGTGCAGATGCAGATGGTACCCGTGGGGCTCACCGGGAGAGACGTGATCGCCACTGCGGACACCGGTTCTGGGAAGACTGTGGCTTTCCTTCTGCCGGTGGTGATGAGAGCACTGCAGAGTGAATCTGCGTCTCCGTCTTGTCCGGCATGTTTGATCTTGACCCCAACCCGTGAGTTGGCCATCCAGATCGAGGAGCAGGCAAAAGAGCTGATGAGGGGTCTTCCCAACATGAGGACAGCTCTTCTGGTCGGTGGGATGCCACTACCTCCACAACTGCATCGACTAAAGCACAACATCAAGATTGTGATCGGCACTCCTGGACGCCTCCTGGAGATTCTGAAGCAGAAGGCCGTACAGCTGGATCATGTCAGGACCGTTGTGGTTGATGAGGCAGACACCATGCTGAAGATGGGCTTCCAGCAGCAGGTCCTGGATATTTTGGAGCAGGTCCCAGAAGACCATCAGACTCTGCTGACGTCAGCCACTATTCCCACCGGCACACAGCAGCTGGCAGAGCGTCTCACCCATGACCCAGTGACCATCACCATCGGCCAGAAGAACCAGCCCTGCGCAAACGTTCGGCAGATCGTCCTTTGGGTGGAGGAGCCCTCCAAGAAGAAgaagctttttgagatcttaaacGACGAAAAGCTCTATCAGCCTCCAGTGGTTGTGTTTGTGGATTGTAAATTGGGAGCTGATCTGCTGTGTGAAGCTGTGCAGAAGGTCATGAGTTTAAACACAGTCGCCATTCATTCAGACAAGATGCAGTGGGAACGCAACAAAATTGTGAAGGGTCTCCTAGAGGGTCAGTTTGACGTGGTGATCAGCACTGGGATTCTGGGTCGAGGTTTAGATCTGGTCAATGTAAAGCTGGTCATAAATTTTGACATGCCCTCCAACATGGATGAATACGTCCATCAGATTGGCCGAGCGGGTCGTCTGGGCCACAGAGGCACCGCCATCACCTtcatgaacaacaacaacaagcgtCTGTTTCTGGAGATGGTGAAGAGAGTGAAGCCCACCGGCTCCATCCTGCCCCCGCAGATCCTCAACTCGCCACATCTGCACGAGCAGCAGCGCAGAGACAAGCagaaaaacacacaacacacacacagcatcttaCACCTCATACAACAACACGACAAGAGGTCTGCCAGGAAATAACAGGAGACCTGCGGATTAATAAAGGAGTTGTTGAGGATTTGTCATTCATGTTTTCAATAAATGCTATGAATAAATTAAGCAAATATTCCTTTAGACTGTTAGTCATAGTGGTCTACCGGAAAAGGGTGGTTTGCCAtcttggaggaaagtccttaccccaggtggtgGAGGTCAAGTATCTAGGGGTTTTGTTAAATAGTAAGTTAAGGATGAAACGTAAGATTGATTGGCGAAtcagtgcagtggcagcagtaatacGGTTGATGTTCCGGTCAATTGTGGTAAAAAAGGAGCTGAgttgaaaggcaaagctctcgatttaccgatCAATTTACATTCCTACTCTTACctgtggtcatgagctttggtACATGACTGATAGGActagatctcggatacaagcgcctgaaattagtttccttcacaggaagggcacacccttatagatTGGAGTAGAGCCGCTGGTCCTCCACATCGAaaaaagtcagctgaggtggctcctGGACGCCTACTTAGAGAGGTGTTCCATGCATGTCCCACTGgcaggaggcctcggggaagactcaGCCCACGTTGGAGGGACTATGtttcttggctggcctgggaacgcctcgggatccccctggaggagctggagggaagtctggggttctctcctaagactgctgcccccgcgacccggctaaaacatgaataaatagttAACGTAAATAAACTGAAGTCTATAAATTCTA

Function

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003724 RNA helicase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-665 Predicted to enable RNA binding activity and RNA helicase activity. Human ortholog(s) of this gene implicated in orofaciodigital syndrome V. Orthologous to human DDX59 (DEAD-box helicase 59).

Ensembl:

ensembl_id ENSDART00000128290

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00040512 lncRNA upstream 409290 22004114 ~ 22010944 (+) False XLOC_020421
TCONS_00041899 lncRNA upstream 517120 21900680 ~ 21903114 (+) True XLOC_020417
TCONS_00041898 lncRNA upstream 519216 21900318 ~ 21901018 (+) False XLOC_020417
TCONS_00042141 lncRNA upstream 568103 21848286 ~ 21852131 (+) True XLOC_020416
TCONS_00041897 lncRNA upstream 597007 21822959 ~ 21823227 (+) True XLOC_020415
TCONS_00041900 lncRNA downstream 49705 22478264 ~ 22566214 (+) False XLOC_020427
TCONS_00042142 lncRNA downstream 71368 22499927 ~ 22629319 (+) False XLOC_020427
TCONS_00040523 lncRNA downstream 292663 22721222 ~ 22723937 (+) True XLOC_020428
TCONS_00042143 lncRNA downstream 800151 23228710 ~ 23263045 (+) False XLOC_020432
TCONS_00042144 lncRNA downstream 825089 23253648 ~ 23263045 (+) True XLOC_020432
TCONS_00040517 mRNA upstream 104911 22303053 ~ 22315323 (+) True XLOC_020424
TCONS_00040516 mRNA upstream 107987 22302614 ~ 22312247 (+) False XLOC_020424
TCONS_00040515 mRNA upstream 145841 22260210 ~ 22274393 (+) True XLOC_020423
TCONS_00040514 mRNA upstream 383927 22021936 ~ 22036307 (+) True XLOC_020422
TCONS_00040513 mRNA upstream 405273 22010128 ~ 22014961 (+) True XLOC_020421
TCONS_00040520 mRNA downstream 9002 22437561 ~ 22477008 (+) False XLOC_020426
TCONS_00040521 mRNA downstream 10224 22438783 ~ 22476160 (+) True XLOC_020426
TCONS_00040527 mRNA downstream 930810 23359369 ~ 23430865 (+) False XLOC_020433
TCONS_00040528 mRNA downstream 1002129 23430688 ~ 23479989 (+) True XLOC_020433
TCONS_00040530 mRNA downstream 1118367 23546926 ~ 23582605 (+) True XLOC_020437
TCONS_00040488 other upstream 1326269 21093851 ~ 21093965 (+) True XLOC_020402
TCONS_00040475 other upstream 2268253 20151925 ~ 20151981 (+) True XLOC_020387
TCONS_00040472 other upstream 2280642 20139525 ~ 20139592 (+) True XLOC_020385
TCONS_00040470 other upstream 2627001 19793119 ~ 19793233 (+) True XLOC_020381
TCONS_00040469 other upstream 2648422 19771698 ~ 19771812 (+) True XLOC_020380
TCONS_00040522 other downstream 137615 22566174 ~ 22588719 (+) True XLOC_020427
TCONS_00040524 other downstream 411999 22840558 ~ 22840675 (+) True XLOC_020429
TCONS_00040525 other downstream 527173 22955732 ~ 22955849 (+) True XLOC_020430
TCONS_00040526 other downstream 667129 23095688 ~ 23095804 (+) True XLOC_020431
TCONS_00040529 other downstream 1063767 23492326 ~ 23493332 (+) True XLOC_020436

Expression Profile

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