RNA id: TU1264248



Basic Information


Item Value
RNA id TU1264248
length 477
RNA type TUCP
GC content 0.58
exon number 3
gene id LOC110538360
representative False

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 75774976 ~ 75790602 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CACTACGCACAAAAAAGGAAGAGGCAGCCTAGCAGATGACATCACCATCATTGGGGGCAACCGCACAGGCATCTTTGTTAGCAGCGTCAGAGCTGGTTCTCCTGCTGAGCAGTGGGGTCTGAAGGAGGGCAGTGAGTTACTGGAGcTGGAGAAGGTTCTGTTTGGTGGGGGCAGTGTGCTGATGGGCCAGTGCACTGGAGAGGTGGCCCACTTCTCTCTGCAGTGGTGGACAGAGCCCTCTTCTCTCAAACACCAGACCAACACAGGGGCCTACTCCAAGTTATGTGCCCAGCTCCCTTCTCCTACCTTCCACGGTGCTGACTCCTTCTACGTGCGCGTCAACCTGGACCTGGACCCTCATAGCGACCTGCCCTGTCTGGGGGTGCGCTGTGATGACATAATACACGTCACTGACACCCGTTACAATGGGAAGTACCAGTGGCGCTGCACCCTGGTGAACCCCCGCACAGCCAAGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1264235 lncRNA upstream 23297 75764039 ~ 75764239 (+) True G1111977
TU1264232 lncRNA upstream 28887 75758364 ~ 75758649 (+) True G1111974
TU1264195 lncRNA upstream 72704 75714631 ~ 75714832 (+) True G1111942
TU1264193 lncRNA upstream 75509 75711698 ~ 75712027 (+) True G1111940
TU1264191 lncRNA upstream 76965 75710353 ~ 75710571 (+) True G1111938
TU1264252 lncRNA downstream 952 75789243 ~ 75790094 (+) True LOC110538360
TU1264216 lncRNA downstream 4011 75792302 ~ 75794213 (+) True LOC110538359
TU1264260 lncRNA downstream 33165 75821456 ~ 75821759 (+) True G1111999
TU1264271 lncRNA downstream 47887 75836178 ~ 75836555 (+) True G1112003
TU1264270 lncRNA downstream 48344 75836635 ~ 75837450 (+) True G1112002
XM_036938452.1 mRNA upstream 52000 75728122 ~ 75735536 (+) False LOC110538363
XM_021625123.2 mRNA downstream 3964 75792255 ~ 75821063 (+) False LOC110538359
XM_021625120.2 mRNA downstream 35197 75823488 ~ 75835962 (+) False LOC110538357
XM_021625121.2 mRNA downstream 35197 75823488 ~ 75835962 (+) False LOC110538357
XM_021625122.2 mRNA downstream 35199 75823490 ~ 75835962 (+) True LOC110538357
XM_036938456.1 mRNA downstream 49775 75838066 ~ 75851511 (+) False LOC110538356
TU1264251 other upstream 549 75784350 ~ 75786987 (+) False LOC110538360
TU1264225 other upstream 33943 75750870 ~ 75753593 (+) True G1111970
TU1264215 other upstream 41916 75745139 ~ 75745620 (+) True G1111961
TU1264041 other upstream 364373 75418789 ~ 75423163 (+) True G1111805
TU1263295 other upstream 739180 74960266 ~ 75048356 (+) True G1111126
TU1264268 other downstream 60314 75848605 ~ 75853712 (+) True LOC110538356
TU1264223 other downstream 107321 75895612 ~ 75895873 (+) True G1111968
TU1264365 other downstream 499307 76287598 ~ 76288502 (+) True G1112079
TU1264368 other downstream 511769 76300060 ~ 76300527 (+) True G1112082
TU1264601 other downstream 676493 76464784 ~ 76470227 (+) True LOC100136171

Expression Profile