RNA id: TU1285100


Basic Information

Item Value
RNA id TU1285100
length 463
RNA type TUCP
GC content 0.55
exon number 5
gene id LOC110516622
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 94934381 ~ 95232039 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGAACAAAACCAGCCATCCTATCCTACTGACTGTGGAGAacgtgGGGGGGCCTGTGGACCCCATCACCCCCACCATCATCATCCCTCCTAAGAACACCAGTGTGAACGCGGGGAGgaatgatgtcattatggagtgtgTGGCCAATGCTAGacCTCTGATCAAGATGGTTATAACCTGGCGTAAGGATGGTGTAGTGGTCAGTACAGGGATACGTGACTTTGGCCGCAGGCTGACCATCAGCCTCCCAGCGGTCAGTGACAGTGGTTACTATGAATGTGAGGCCACCCTCCGCAGCAGCACTGTGCCTCCGGTCAACGCAGGGGCCTACCTACATGTtctagACCATCCCCAGTTTGTGAAGGAGCCTGTCCAACACATCAGTGCAGAGATGGAGAAGGTGGTGGATATCCCCTGCCAGGCacgaggtgTCCCCCAGCCAGACATAGTGTGGTATAAGGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1285079 lncRNA upstream 11421 95180994 ~ 95200883 (+) False LOC110516622
TU1284838 lncRNA upstream 31385 94934381 ~ 95180919 (+) False LOC110516622
TU1284928 lncRNA upstream 79177 95132245 ~ 95133127 (+) True G1129455
TU1284921 lncRNA upstream 111140 95100755 ~ 95101164 (+) True G1129448
TU1284919 lncRNA upstream 111820 95099195 ~ 95100484 (+) False G1129448
TU1285138 lncRNA downstream 56424 95280607 ~ 95286705 (+) True LOC110538753
TU1285152 lncRNA downstream 86026 95310209 ~ 95312268 (+) False LOC110538757
TU1285153 lncRNA downstream 86026 95310209 ~ 95312268 (+) False LOC110538757
TU1285154 lncRNA downstream 86026 95310209 ~ 95312268 (+) True LOC110538757
TU1285201 lncRNA downstream 147543 95371726 ~ 95371941 (+) True G1129655
XR_005035226.1 mRNA upstream 524673 94687199 ~ 94687631 (+) False LOC118937797
XR_005035227.1 mRNA upstream 524673 94687199 ~ 94687631 (+) False LOC118937797
XR_005035228.1 mRNA upstream 524673 94687322 ~ 94687631 (+) True LOC118937797
XM_036939295.1 mRNA upstream 669205 94531569 ~ 94543099 (+) False LOC110485292
XM_036939331.1 mRNA downstream 54272 95278455 ~ 95282270 (+) False LOC110538753
XM_036939335.1 mRNA downstream 70978 95295161 ~ 95300530 (+) False LOC110513898
XM_036939334.1 mRNA downstream 71172 95295355 ~ 95300530 (+) False LOC110513898
XM_036939333.1 mRNA downstream 71841 95296024 ~ 95300530 (+) False LOC110513898
XM_036939336.1 mRNA downstream 71841 95296024 ~ 95300530 (+) True LOC110513898
TU1285088 other upstream 17024 95194386 ~ 95195280 (+) True G1129576
TU1284420 other upstream 378370 94737769 ~ 94833934 (+) False G1129047
TU1284417 other upstream 378370 94831429 ~ 94833934 (+) True G1129047
TU1283489 other upstream 1128134 94065687 ~ 94084170 (+) True LOC110485300
TU1283478 other upstream 1128505 94065687 ~ 94083799 (+) False LOC110485300
TU1285103 other downstream 28237 95252420 ~ 95253323 (+) True G1129591
TU1285124 other downstream 42335 95266518 ~ 95267056 (+) True G1129601
TU1285157 other downstream 76601 95300784 ~ 95309697 (+) True G1129613
TU1285338 other downstream 294995 95519178 ~ 95519642 (+) True G1129772
TU1285388 other downstream 405420 95629603 ~ 95630575 (+) True LOC110538761

Expression Profile