RNA id: XM_036939339.1


Basic Information

Item Value
RNA id XM_036939339.1
length 2213
RNA type mRNA
GC content 0.53
exon number 17
gene id LOC110486837
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 95395260 ~ 95621138 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGCTGATCATCATCTTTTACATTATAGCGACTCAGCTGCGGTTGGGAACCGTTTCGCCCGCAAAGGTGCTCTGCGGCAGAAAAACGTGCATGAAGTCAAAAATCACAAATTTACTGCCAGGTTTTTCAAGCAACCGACATTCTGCAGTCATTGCACAGACTTCATATGGGGATTTGGGAAACAAGGATTCCAGTGCCAAGTGTGCTGTTTTGTGGTCCACAAAAGGTGCCATGAGTTTGTCACGTTCTCTTGCCCTGGAGCCGACAAAGGCCCCGACACAGATgatCCCAGAAGCAAGCACAAGTTTAAGATCCACTCGTACGGCAGTCCCACGTTCTGCGACCACTGTGGCTCCCTCCTCTATGGACTCATCCACCAGGGGATGAAATGCGACAccTGCGACATGAACGTACACAATCAGTGTGTGATGAACGTGCCAAGCCTGTGTGGGACAGACCACACGGAGCGCAGAGGACGCATCTTCCTCAAGATCGACGTCAGCGGAGACAGGCTACACGTCACAGtggggGAAGCCAGAAACCTGATCCCCATGGACCCTAACGGTCTGTCTGACCCCTACGTGAAGCTCAAGCTCATCCCTGACCCCAAGAACGAGACCAAACAGAAGACCAGGACCATACGCTCCTCACTCAACCCCACCTGGAATGAGTCTTTCAgcttTAAGCTGAAGGTAATGGATAAGGACCGTCGTCTGTCTATAGAGGTGTGGGACTGGGACCGTACCACCAGGAACGACTTCATGGGCTCAATGTCGTTCGGTGTGTCTGAACTCATCAAGTCCCCCGCCTGCGGCTGGTACAAGATGCTGTGCCAGGAGGAAGGGGAGTACTACAACGTTCCCATCCCTGAGATCGACGACGTCAACATGGAGCTCAGGCATAAGTttgagAAAGCCAAGCTGGGCCATGGGAAGAAAGTGATTACGCCAGCGGACCACAGACGGTTCAGCTCGGACCGCACCGTGCCCGGAATGGACCGTGTCCGACTCAGTGACTTCAACTTTCTGGCTCTGCTGGGGAAGGGCAGCTTTGGCAAGGTGATGCTGGCAGAGATGAAGTCCACAGAGGAGCTGTACGCCGTCAAGATCCTGAAGAAGGACGTGGTGATCCAGGATGATGATGTGGAGTGTACCATGGTGGAGAAGAGAGTCCTGGCCCAGAGAGACAAACCACCATTCCTCACTGCACTCCACTCCTGCTTTCAGACTGTGGATCGTCTGTACTTTGTGATGGAGTATATTAACGGAGGGGACCTCATGTACCACATTCAGCGTGTGGGCAAGTTCAAGGAGCCACAGGCAGTGTTCTATGCTGCAGAGATCGCTGTGGGCCTGTTCTTCCTGCACAGAAAGGGTGTTGTATACAGGGACCTCAAATTGGACAACGTGATGCTGGACTCTGAGGGCCACATTAAGATAGCAGACTTTGGCATGTGTAAGGAGAACATGTATGAAGGCATGGTCACACGCACTTTCTGTGGTACCCCCGACTATATCGCCCCAGAGATCATTGCATATCAGCCCTATGGGAAATCAGTGGACTGGTGGGCTTATGGGGTTCTCCTCTACGAGATGCTAGCAGGACAGCCGCCGTTCGAtggagaggatgaagatgagtTGTTCCAGTCCATCATGGAGCACAACGTGTCCTACCCCAAGTCTATGTCTAAGGAAGCTGTCGTCATCTGCAAGGGATTCATGACCAAGCACCCATCAAAGCGTCTGGGCTGTGGTCTGGAGGGCGAGAGGGACATCCGGGAGCAGGCCTTCTTCAGACGTATCGACTGGGACCGCCTCGCCAACAGAGAGATCCAACCGCCATTCAAGCCTAAAacgggcGGCAAAGGAGCAGAAAACTTTGACAAGTTCTTCACACGCACCCAGCCCATGTTGACCCCTCCAGACCAGCTAGTCATCGCCAACATTGACCAGAGCGACTTCGCTGGTTTCTCCTACATCAACCCACAGTTCATCCACCCTTCCCTCCTTCACAGTGTGGTATGAGGGGATAgatcagggagaggaggaagagagagaaagaggttggtgagagagcaagagaaagagagagagggggagaagagagccatgtggactgggactgggacagcAACCCTCCACATTGACCACCAATCCCCTATTGTCCCTTTGTCAAAGAGACTAATATTATCTTCATGTGTTCTCTGGACTTC

Function

GO: NA

KEGG:

id description
K02677 PRKCA; classical protein kinase C alpha type

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1285275 lncRNA downstream 4974 95389734 ~ 95390286 (-) True G1129719
TU1285273 lncRNA downstream 5619 95389416 ~ 95389641 (-) True G1129717
TU1285242 lncRNA downstream 17886 95374265 ~ 95377374 (-) False G1129692
TU1285241 lncRNA downstream 17886 95374553 ~ 95377374 (-) True G1129692
TU1285216 lncRNA downstream 82998 95310944 ~ 95312262 (-) True G1129668
TU1285643 lncRNA upstream 13249 95634387 ~ 95634704 (-) True G1130054
TU1285647 lncRNA upstream 21967 95643105 ~ 95643307 (-) True G1130058
TU1285648 lncRNA upstream 22593 95643731 ~ 95644013 (-) True G1130059
TU1285664 lncRNA upstream 52757 95673895 ~ 95674153 (-) True G1130074
TU1285665 lncRNA upstream 53698 95674836 ~ 95680048 (-) True G1130075
XM_036939338.1 mRNA downstream 6779 95380385 ~ 95388481 (-) True LOC118937798
XM_021625727.2 mRNA downstream 85497 95300960 ~ 95309763 (-) True LOC110538756
XM_021625726.2 mRNA downstream 85500 95300960 ~ 95309760 (-) False LOC110538756
XM_036939332.1 mRNA downstream 99152 95287208 ~ 95296108 (-) True LOC118936310
XM_036939330.1 mRNA downstream 117166 95269361 ~ 95278094 (-) True LOC110538752
XR_002475813.2 mRNA upstream 374107 95995245 ~ 95996642 (-) False LOC110538778
XR_005035332.1 mRNA upstream 374251 95995389 ~ 95995530 (-) True LOC118937923
XR_005035246.1 mRNA upstream 684730 96305868 ~ 96313005 (-) False LOC118937801
XM_036939367.1 mRNA upstream 693188 96314326 ~ 96341124 (-) False LOC118937802
XM_036939366.1 mRNA upstream 693188 96314326 ~ 96365986 (-) True LOC118937802
TU1285529 other downstream 1293 95392201 ~ 95393967 (-) True G1129951
TU1285045 other downstream 302167 95092622 ~ 95093093 (-) True G1129544
TU1284503 other downstream 937062 94451615 ~ 94458198 (-) True LOC110511881
TU1284122 other downstream 1120078 94274562 ~ 94275182 (-) True G1128822
TU1284112 other downstream 1142872 94251001 ~ 94252388 (-) True G1128814
TU1285638 other upstream 4620 95625758 ~ 95626165 (-) True G1130049
TU1285748 other upstream 223969 95845107 ~ 95846283 (-) False G1130145
TU1286238 other upstream 771261 96392399 ~ 96435350 (-) True LOC110516715
TU1286832 other upstream 1081269 96702407 ~ 96705588 (-) True G1130893
TU1286846 other upstream 1093653 96714791 ~ 96715635 (-) True LOC110518479

Expression Profile