RNA id: XM_036939364.1


Basic Information

Item Value
RNA id XM_036939364.1
length 1795
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC118937800
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 96221848 ~ 96301339 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtggcggTCTGAGTACTTCTCTGTTTATTGAATACAGGGTAGTATTATCAGCACATGGTTTCCTGACTGCTCCTGTCTCCACTAGAGGCAGCTGTATGGTTGGGGACTGGGgccgtggagagagagaacaggaatcGGACTGGCTTTTGTGAATGAGAGAAGacaCAACTAAGGTGCTGGAGCAGGAGATACCCGCctcgatggaggagagagggatggaggaagtgaAACCGTTAGCAGTAGAAGACAAAGCAGCAGCAGAGGAAGCTGTGGAGGAGAGAGTAGCTCAGGAGAAGACAGAGGATAGCACAGCGCAGAATaaagagacggaggagagagaagtagacgtagagagagagatggagggagaggtagaggtcgTGACCCCTTGCCCTACAGAGAGCCATGGTCTCCAGGGAACCATTAAAGGTCATGACCTCTTCGGCTATGTGGGCATCGAGGCTGTTCTGGACCAGATGAGACGCAAGACCATGAAGGCTGGCTTCGAGTTCAACATCATGGTCGTGGgtcagagtggactagggaagtctaccctggtcaacactctGTTCAAGTCTAAAGTCAGTCGCAAATCCTGCAGCCCAAACTACGAAGAGAAGATCTCCAAGACTGTCAAACTGCAGTCCGTCAGCCatgTGATAGAGGAGAAGGGAGTGAAGATGAAGCTCACAGTGATTGACACGCCAGGATTTGGAGACCAGATAAACAACGAAAACTgttGGGAGCCTATAGTGAGTTATGTTAATGAGCAGTATGAGAGGTACCTGAAAGAAGAGTTGTACGTCAACAGGAAGCCGAGGATCCCTGACACACGCGTCCACTGCTGTGTCTACTTCCTGCCTGCCACCGGACACTGGTTACGTCCCATAGACGTGGAGTTCATGAAGAGGCTGGGGAAGATAGTCAGCATCGTACCGATCATCGCTAAGGCAGACACACTCACCATGGAGGAGAGACAAGAGTTTAAACAGAGGATAAGACAGGACCTGAAGGCCAATGGGATCCGAGTCTACCCTCAGACTGAGTACGACGAAGATCCAGAGGACAGGATACTCAACGACAAGATCaggGAAAACATTCCGTTTGCGGTGGTGGGGACAGACAAGGAACACCAGGTAAACGGGAACAAGGTCCTGGGCAGGAAAACCAAATGGGGCATCATAGAGGTTGAAAACGTGGCACATTGTGAGTTTACCAACTTGAGAGACCTGCTGATTAGGTCCCACCTGCAGGACCTGAAGGACGTGACCCACAACATCCACTATGAGACATTCCGCGTCAGGAGACTGAACGAGAGTAACCTGACCGTCCACGGTCTGGCCCTGTCCTGCTTTCCAATGGAGAACGGGACCCACGGAACCAATGGAACCTCGGACAGGAGCGAATCAGAGAGCCACCTCTGAGGGGGACCACAGAATGCGTCACACACAGCAGCACCTCCAGCTTCCTGCTCACagcttcctgtttcctgttttgaCTGCAAAATTGTTGGTCGACTGTTTCCCCCAATCGGAAcacgagaaagagagcgaaagaaagaaagaggaactTTTTTTTAACAAAGGAGAGATGTTTTCGGTGGCCACCACACCTTGGATTTTGAACATTTTATTGAGTTTTACTAAAGACATTATTGATAAGAAATGCATTTAAACTTCATATATGAATATATTTTCTCAGAATGAGTTTATATTTCCTGgaaagatgagagatggagaggaggagagagggatggagagagaaaaacagagggggagagtgagggatggagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1285981 lncRNA upstream 14694 96204776 ~ 96207210 (+) True G1130326
TU1285978 lncRNA upstream 20181 96201081 ~ 96201723 (+) True G1130325
TU1285960 lncRNA upstream 47056 96174611 ~ 96174848 (+) True G1130311
TU1285849 lncRNA upstream 99258 96122399 ~ 96122646 (+) True G1130225
TU1285836 lncRNA upstream 152239 96069389 ~ 96069665 (+) True G1130213
TU1285944 lncRNA downstream 490 96301829 ~ 96305010 (+) False G1130304
TU1285946 lncRNA downstream 490 96301829 ~ 96305010 (+) False G1130304
TU1285949 lncRNA downstream 490 96301829 ~ 96305010 (+) False G1130304
TU1285950 lncRNA downstream 490 96301829 ~ 96305010 (+) False G1130304
TU1285941 lncRNA downstream 3118 96304457 ~ 96305537 (+) False G1130304
XM_036939361.1 mRNA upstream 56510 96139773 ~ 96165394 (+) True tbc1d16
XR_005035245.1 mRNA upstream 82868 96124942 ~ 96139036 (+) False LOC110539035
XM_036939359.1 mRNA upstream 82868 96124948 ~ 96139036 (+) False LOC110539035
XM_036939360.1 mRNA upstream 82868 96124958 ~ 96139036 (+) True LOC110539035
XM_036939358.1 mRNA upstream 105346 96103366 ~ 96116558 (+) True LOC110538773
XM_036939370.1 mRNA downstream 241531 96542870 ~ 96594168 (+) False LOC110517345
XM_036939371.1 mRNA downstream 241531 96542870 ~ 96594168 (+) False LOC110517345
XM_036939372.1 mRNA downstream 241531 96542870 ~ 96594168 (+) True LOC110517345
XM_036939380.1 mRNA downstream 316900 96618239 ~ 96633339 (+) True LOC110512418
XR_005035250.1 mRNA downstream 325769 96627108 ~ 96630087 (+) False LOC118937803
TU1285388 other upstream 591329 95629603 ~ 95630575 (+) True LOC110538761
TU1285338 other upstream 702262 95519178 ~ 95519642 (+) True G1129772
TU1285157 other upstream 912207 95300784 ~ 95309697 (+) True G1129613
TU1285124 other upstream 954848 95266518 ~ 95267056 (+) True G1129601
TU1285103 other upstream 968581 95252420 ~ 95253323 (+) True G1129591
TU1286334 other downstream 316917 96618256 ~ 96623345 (+) False G1130570
TU1286335 other downstream 320050 96621389 ~ 96623345 (+) False G1130570
TU1286333 other downstream 329227 96630566 ~ 96633452 (+) False G1130570
TU1286336 other downstream 329227 96630566 ~ 96633452 (+) False G1130570
TU1286341 other downstream 329227 96630566 ~ 96633452 (+) True G1130570

Expression Profile