RNA id: XM_036939367.1


Basic Information

Item Value
RNA id XM_036939367.1
length 2372
RNA type mRNA
GC content 0.56
exon number 7
gene id LOC118937802
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 96314326 ~ 96365986 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTTTGgagtgaaatgtttactgttgatttcttttttttttctatttttctcaTTTTTGTTCAATTCAATTGCTCaggcaatgtaaacacatgttgCCAATaaagcatgggaaacatgttgaactgaaattgaattgagagagagagaacgaaagagagagagagagagagagtaccgcctcagcctcctctcttcctctcctcctctgttgagTTCCGCTGATGTCAGTGAGCCAGGCGATGTCATGTTGGTTTCTATTTACAGGgttctcgttccctctctctctctccccgacaCTGATTCGAACGCACCACATAGTTATATCCGCTGACACCGTGGAATGATGCGCCGATGAAACAAACAACACCGGACAACACATCGTCCCGATTTCACGCATATTCCCTCTTATTCTGTCCTCGTCGCTACCGATACAAAATTATGCACCTTTCAAACGATTCGCATCGCGTCGTAGCTACAACAATTCAATAACATCCCCCGCTCTCCGCCATTCCCTGTGGATGCTGCTGGTAGTATGGTGATGCGGGCGATAAAATAGAGCTCCGTTTGGTGAAAGACTTGCGAGGCTTCGGGTCAACCGGGGGAGGTGACGGGGTTCAGTTTAAAGGTTCCCAATGTTGAACATGTCGACCCCCAGCGAGCTCAAGTCTCCGTGTGTCCCGAGGAACGGCATGGTCAAGCTCCCCCCTCAGCCCAACGGTTTGGGCAGCGCCAGCATCACCAAGGGCACGCCCGCCGCCAAGAACCGCCTGTGCCAATCCTCCTCCGTGCCCGGCATCCTACCCCCGCCTTCCCTACCCTACCACCTGGACCCCCTCAACCCCCTGGGTCCCTCTCTCCTGGGTCCAGACCTGGACCACAGCCCCCTGATGGTCCTCAAACCCCCGCTGCGCCAGGTCCCCCTCACCTTCCCCAAGCCTCACCTTCCCCTCACCCTGCCTCTGGCCCTTCTGCCGCCCCTGGAGCGCCAGCTGGCCCTGGATGAGAAGCTGCTCAACAGGCTGCTGTGGTATTTCACCACGGCTGAGAAGTGTGTCCTGGCCCAGGTGTGTAGGACCTGGAGGAAAGTGCTGTACCAGTCTAAGTTCTGGGAGGGTGTCACGCCCATCCTCCACGCCAAGGAGCTGTACGCCCTGCTCCCCGGCGGAGACAAGGAGTTTGTCAGCCTGCAGGCCTTCGCTCTCAGGGGGTTCCAGGCGTTCTGTCTGGTGGGAGTTTCAGACCTGGACATCTGTGAGTTCATTGATAACTACCCCTTGTCCAAGAAGGGGGTGAAGTCGGTCAGTCTGAAGAGGTCCACCATTACAGACGCAGGCCTGGAGGTGATGCTGGAACAGATGCAGGGTCTGATGCACCTGGAGTTGGCCGGTTGTAATGACTTCACGGAGGCCGGTCTGTGGTCCAGCCTGAACGCACGGCTCACCTCGCTCAGCGTCAGCGACTGTATCAACGTAGCGGACGACGCCATCGCTGCCATCTCACAGCTACTGCCCAACCTGTCAGAGCTCAGCCTGCAGGCCTACCACGTAACCGACACAGCCATGGCTTACTTCACAGCCAAACAGggCTACACCACTCACACACTGCGTCTCCACTCGTGTTGGGAGATCACCAACCACGGTGTGGTTAACATGGTCCACAGCCTGCCCAACCTCACGGCTCTGAGCCTGTCAGGCTGCTCTAAAATCACTGATGACGGGGTGGAGCTGGTAGCAGAGAACCTGAGGAAGCTGCGGAGCCTGGACCTCTCCTGGTGCCCACGCATCACTGACATGGCCCTGGAGTACATCGCCTGTGACCTCCACAAACTAGAGGAGCTGGTACTGGACAGatGTGTGAGGATTACAGATACAGGTCTAGGTTACCTGTCCACCATGTCTTCTTTGAGGAGTCTCTACCTGCGCTGGTGCTGTCAGGTGCAGGACTTTGGGCTACAGCACCTGTTTGGCATGAGGAGTCTACGTCTTCTCTCTCTCGCAGGTTGTCCACTCCTAACCACTACAGGTCTATCTGGTTTGATCCAGATCCAGGATCTAGAGGAGTTGGAGTTGACCAACTGTCCTGGAGCCACAGCCGAACTCTTCAAGTACTACTCACAACACCTGACACGCTGCATGGTCATCGAGTAGCCCCCCGCCCCCGGATCCCCATCACACCCCCCTCTAACCTACCACCTTATCCAACTACCAACTGACCTGCCTACCAATTCCCGACCCCAACTACCCCAACTACCGACCACTCCCTTACTTCAGCCCAACGAACGCAGAGGAGGAATGATGACGATGTCGATGGAGCCAGCCAGGATCTCTGCTCCAGCCAGGATCTCTGCTCCAGCTTGGATCTCTGCTCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1286164 lncRNA downstream 779 96311820 ~ 96313547 (-) False LOC118937801
TU1286167 lncRNA downstream 779 96311820 ~ 96313547 (-) True LOC118937801
TU1286157 lncRNA downstream 4289 96305867 ~ 96310037 (-) False LOC118937801
TU1286160 lncRNA downstream 4289 96309305 ~ 96310037 (-) False LOC118937801
TU1286162 lncRNA downstream 5750 96217628 ~ 96308576 (-) False LOC118937801
TU1286226 lncRNA upstream 22881 96364005 ~ 96364383 (-) True G1130497
TU1286231 lncRNA upstream 30893 96372017 ~ 96373070 (-) True G1130500
TU1286233 lncRNA upstream 41021 96382145 ~ 96382371 (-) True G1130502
TU1286235 lncRNA upstream 44937 96386061 ~ 96387134 (-) True G1130504
TU1286236 lncRNA upstream 48463 96389587 ~ 96390301 (-) True G1130505
XR_005035246.1 mRNA downstream 1321 96305868 ~ 96313005 (-) False LOC118937801
XR_002475813.2 mRNA downstream 317684 95995245 ~ 95996642 (-) False LOC110538778
XR_005035332.1 mRNA downstream 318796 95995389 ~ 95995530 (-) True LOC118937923
XM_036939339.1 mRNA downstream 693188 95395260 ~ 95621138 (-) True LOC110486837
XM_036939338.1 mRNA downstream 925845 95380385 ~ 95388481 (-) True LOC118937798
XM_036939369.1 mRNA upstream 51115 96392239 ~ 96435793 (-) False LOC110516715
XM_021625833.2 mRNA upstream 157420 96498544 ~ 96505238 (-) True LOC110538851
XM_036939373.1 mRNA upstream 264250 96605374 ~ 96610119 (-) True LOC110494398
XM_036939381.1 mRNA upstream 292290 96633414 ~ 96637111 (-) False eef2kmt
XM_036939558.1 mRNA upstream 373166 96714290 ~ 96728931 (-) False LOC110518479
TU1285748 other downstream 468043 95845107 ~ 95846283 (-) False G1130145
TU1285638 other downstream 688161 95625758 ~ 95626165 (-) True G1130049
TU1285529 other downstream 920359 95392201 ~ 95393967 (-) True G1129951
TU1285045 other downstream 1221233 95092622 ~ 95093093 (-) True G1129544
TU1284503 other downstream 1856128 94451615 ~ 94458198 (-) True LOC110511881
TU1286238 other upstream 51275 96392399 ~ 96435350 (-) True LOC110516715
TU1286832 other upstream 361283 96702407 ~ 96705588 (-) True G1130893
TU1286846 other upstream 373667 96714791 ~ 96715635 (-) True LOC110518479
TU1286930 other upstream 521019 96862143 ~ 96867423 (-) True LOC110487147
TU1286950 other upstream 635051 96976175 ~ 96981940 (-) True LOC110519445

Expression Profile