RNA id: XM_036939373.1


Basic Information

Item Value
RNA id XM_036939373.1
length 1738
RNA type mRNA
GC content 0.52
exon number 7
gene id LOC110494398
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 96605374 ~ 96610119 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACACATTGCATTAGCCTAATTTAATAAAACTGAATTCCCAGCTTCTCAATCGATCGAGCCACGTGACAGCTCGTTTTCGCCAAACAAGCACATCACTCTTGCAAATCACTCTTGCAAATCAGGTATATGCGCTGCGTCAACCGTTTGGGGTTTAGCCTAGGGCGGCTATTGCTAGACTTTTAGTAGCCTTATATCAGAACATGGCTAGGTTTGTGGTAGAGGTGTTTTTTGTCCTTGTTTTCTCCGCCACCAATGCGGCGCAGGAGGAGGTCATTGATGTGATTCTAGCCAGTCTCGCCAAAAGCGCATCGTTCCTGGAGCAAGAGCACCGTAACATCAACCTAGACGGAGTGGTCGGGTACATCATCCTGCAGGCGGAGTTGAAGGAAGCAGTGAGAGCGTGGCCCCACACTGACCCTCTGAGCTGGTCTCAGCGCACCGCTACGGTAACCCTGGTCAGGAGGTTGGACCAGAGCCTGGCTAAGGCTGTCACCGAGCTGGAGAAGACTGACCCCAAATACTACAGAGagtttGAGCCTCTGTTGAGCTGGACCTTCTGGTCAGTACCTCATGAGTGGAGCACCACAGATCCCTCTCTGGCCTACTCCTCCGGTCGAACCATGGAGTGTTACGATGAGACGCAGAGCGACAAGTGTATGACCCTGCTACTGGGaacatgGAAGAACAACGGGACTCCTTGCATCGTGACCAAGTCATGTCGTGACACAATGACGAGGTTTGGATGTCCTAACTACTCCCTCTCTCACCAGCTGCTCTACTTCATGCTGGGAGCCaatAGAGGTTGTTCTGCCATGTTGAAGGGGGACATGCGTACGTCGCGTGCTAACCTAACAGAGAGACAGTACCAGGGGATATTCTGCTCCAACATGCTGAAGGGAAACATGGACATCATACAGAATAACTTCACCGGGGAGACCCAGGACATCTTCATCGAAAACATACTGCTGTGTGGATTGGCTGGTTTCTCTGACTTTCTCAAAGTCGATTGGCTGCAGCACATTCTGAGGCTGCAGGATCAGGAAGTGGGATGTTTTACACAGCCCCACAGaagagtgaagaggagagagagaatgttgaaGGatGGTTGTTCCAGTCACATAACAGGCGTGTCAGTGAGCGCTCTGGGAGGATACCTCAACTACTACCTGACAGAGCAGGACATCACCAAGAGACCACTCACCTGAATGTCAACCACCCTTCACCTGGCTGTGTGACCCTTCACCTGAATGTGTGACCCTTCACCTGAATGCCAACCACCCTTCACCTGGCTGTGTGACCCTTCACCTGGATGTGTGACCCTTCACCTGGATGTGTGACCCTTCACCTGAATGTGTGACCCTTCACCTGGCTGTGTGACCCTTCACCTGGATGTGTGACCCTTCACCTGGATGTCAACCACCCTTCACCTGGCTGTGTGACCCTTCACCTGGATGTGTGACCCTTCACCTGAATGTCAACCACCCTTCACCTGGCTGTGTGACCCTTCACCTGGATCTGTGACCCTTCACCTGAATGTCAACCACCCTTCACCTGGCTGTGTGACCCTTCACCTGGATGTGTGACCCTTCACCTGAATGTCAACCACCCTTCACCTGGCTGTGTGACCCTTCACCTGGATGTGTGACCCTTCACCTGGATCTGTGACCCTTCACCTGAATGTCAACCACCCTTCACCTGGATGTGTGACCCTTCACCTGAATGTGTGACCCTTCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1286748 lncRNA downstream 4510 96600337 ~ 96600864 (-) False G1130841
TU1286749 lncRNA downstream 4510 96600337 ~ 96600864 (-) True G1130841
TU1286752 lncRNA downstream 10986 96593806 ~ 96594388 (-) True G1130842
TU1286760 lncRNA downstream 22362 96582510 ~ 96583012 (-) True G1130847
TU1286755 lncRNA downstream 25387 96579630 ~ 96579987 (-) True G1130845
TU1286783 lncRNA upstream 15891 96626010 ~ 96632722 (-) True G1130860
TU1286780 lncRNA upstream 23344 96633463 ~ 96636087 (-) True eef2kmt
TU1286789 lncRNA upstream 31775 96641894 ~ 96642504 (-) True G1130866
TU1286793 lncRNA upstream 52764 96662883 ~ 96663702 (-) True G1130870
TU1286795 lncRNA upstream 54647 96664766 ~ 96913614 (-) True G1130872
XM_021625833.2 mRNA downstream 100136 96498544 ~ 96505238 (-) True LOC110538851
XM_036939369.1 mRNA downstream 169581 96392239 ~ 96435793 (-) False LOC110516715
XM_036939366.1 mRNA downstream 239388 96314326 ~ 96365986 (-) True LOC118937802
XM_036939367.1 mRNA downstream 264250 96314326 ~ 96341124 (-) False LOC118937802
XR_005035246.1 mRNA downstream 292369 96305868 ~ 96313005 (-) False LOC118937801
XM_036939381.1 mRNA upstream 23295 96633414 ~ 96637111 (-) False eef2kmt
XM_036939558.1 mRNA upstream 104171 96714290 ~ 96728931 (-) False LOC110518479
XM_036939560.1 mRNA upstream 118863 96728982 ~ 96753421 (-) True LOC118937835
LOC110485334 mRNA upstream 231492 96841611 ~ 96845185 (-) True LOC110485334
XM_036939386.1 mRNA upstream 248323 96858442 ~ 96867461 (-) False LOC110487147
TU1286238 other downstream 170024 96392399 ~ 96435350 (-) True LOC110516715
TU1285748 other downstream 759091 95845107 ~ 95846283 (-) False G1130145
TU1285638 other downstream 979209 95625758 ~ 95626165 (-) True G1130049
TU1285529 other downstream 1211407 95392201 ~ 95393967 (-) True G1129951
TU1285045 other downstream 1512281 95092622 ~ 95093093 (-) True G1129544
TU1286832 other upstream 92288 96702407 ~ 96705588 (-) True G1130893
TU1286846 other upstream 104672 96714791 ~ 96715635 (-) True LOC110518479
TU1286930 other upstream 252024 96862143 ~ 96867423 (-) True LOC110487147
TU1286950 other upstream 366056 96976175 ~ 96981940 (-) True LOC110519445
TU1286954 other upstream 493371 97103490 ~ 97106756 (-) True LOC110515892

Expression Profile