RNA id: XM_021559072.2


Basic Information

Item Value
RNA id XM_021559072.2
length 2443
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC110487147
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 96858442 ~ 96867462 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTAGGATGTAGTCTAAACCTTAAAGAAGAAGAAGCCCATAGACGACAGTCTCAAGATAAATGTTTCTTGAAAATGTCGAAACCACAGTTGTTGACTGTGTTTATAGCCAAGCGATTAATATCGGCAGCCGTGAACATATTTGGGATAGAGGAAAGGTGGATAGCTCAGTACCAGGAGCCACTAGCAGCAGTGACTGTTGAGATAATGGCGGCGGTGGAAACGACGATAGAACAAGAGCTCTCCAGTTCAAAGCAGGAGATTGAACGTCTACGGAGGCTTCTTCTGGAGTTGGGAGCAGaCCCCCAGCAGCTAACTGTCCCTGAAGAGGAGGTTCCCCCTGAGCAGCAGCACTGTGAGCAGGAGTGGAGCCCCAGTCTGGGGCAGCAGGACACAGAGCCCTcacagattaaagaggaacaggaggaactcaGGACGAGTCAGGAGGAAATCAGTACGagtcaggaggaagagcagcttcatAGACTTGAGTCTGATTCCACAGATGTTGTAGAGTTCATATTTACTGCTCCTCCCTGTGTGGAAAAGTACTCTgatcaggacagagagagagagagggactctcTACCCACCAACACAACTGAACAGATCCAAACAGAACCTAATGGAGAGGACTACAGAGTATCAGAACCAACCAGTgactctctgctcctctctgcagTAAATCCAGACTGTTCGGCAGCTCACAGTGAAATCATTGTAAGTGTGGATGAGGATGAGAGCGAGGAGCCTGTGTCAAAGACCCTCAAATCAAGGAGGGCACAGGCAGAGACAGGACAAAGCTCTCAAGTCCGCACTGAGGCCGAGAAAACCAGTGAGCTGAAAGAACCGTTGAAGTCTCACACAAATAGGAAGCCGTTCAAATGTCCTGCGTGCGGTAAACGCTATAAGACACGAGGCGGTTTAAAAACGCATCAGAGAATTCACTCAACTGAAAATAATCATCACTGCAAGAAATGTGGCCAATCGTTTAACTTGTTGCAACAATGGAAGAAACATATGAAGAATCACACAGACGAGGAATCGCCTACGTGCCACGTGTGCAGTAAACGTTTTAAACTGCCAAACCATCTGAAAACTCATATGAGATGCCACAGCGTAGAGAAATCCAGTCAGTGTCCGACATGTGGAAAACACTTTAAATCAGGGAAAGACCTAAAGAAACATCAGAGAATTCACACTGAAGATCAACGATACCAGTGTCCGACATGTGGAAAACACTTTAAATCAAAGTACAACCTTAAACAACACAAGAAAATTCACACCGACGAGAAATCGTATCGCTGCAATGATTGTGTCAAGTGCTACAGGACAAAGACGGGCTTAGAAGAGCACGTGAGgactcacacaggggagaaacctttTAAGTGTTCCGTGTGTGAAAAGTGCTTTACTTCAACAACCATTCTAAAACGCCACGAGAGAACTCACAGTGGAGAGAAACCACACTGCTGCACACAATGCAACAAACGCTTCCCTGTCAAGTCAGACCTGGTTAAACACATGAGAacgcacacaggggagaaacctttTAGCTGTAGCGAATGTGACAGATGTTTCAGTCATAACATTAGCCTGAGACTGCACATGAGAACTCACACAGGGGTGAAACCGTACAGCTGCGAAGAATGTGGCAAATGTTTTTCTGTTAACAGTAACCTGAGAATGCACATGaaaattcacacaggagagaaatcgtTTTGTTGCCAGGAATGCGGTAAATGTTTCCGTCATAAAATTAGCCTGAGACTGCATATGATGACTCACAGTGGTGGAGAGAATCTTCACGGATGTACTCAATGCAACAAATGTTTCCCCATCAAATCTCTCCTGGTTAAACACACGATGacgcacacaggggagaaatctAATAGCTGCAAAGAATGTAGCAAATGTTTCAGTCATAACATTAGCCTGAGACTGCACATGAGaatgcacacaggggagaaatcatATACCTGCAAAGCGTGTGGCAAATGTTTCCAAAACAAGACGGTTCTGACGAGGCATATGAGAACTCACAAAGGAGAGAATCCATATAAGTGTCCCCTTTGTGTCAGTTCCCTTATGTCATCAAATGAACTAAAACATCTTTACTTGGGAGAGAAACCAGAGACCGACCAACCAGAGAATCCATCGTGCCTCTGCAGCGATTGTGGCAAACGCTTCCCAACGACGAAAACCCTGAGAGACCACATGAGGACCACACATGAAGAAAGAAGGCATTCGTGCTCTGTTTGTGGAGATTTCTTTATGTCGTTGGGTTCTCTTAAAGTTCACCAGAaaattcacactggagagaaaccccACCAGTGTTCTGTTTGTGGGAAATATTTTGCATTGTAGTGATGGGAAGTTTGGCTCTTTTTACAGACTGATCTTTGactcatttaaataaataaaaaaaactcctcTTTCGACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1286851 lncRNA downstream 128276 96730980 ~ 96731844 (-) True G1130905
TU1286838 lncRNA downstream 148145 96711626 ~ 96711975 (-) False G1130897
TU1286839 lncRNA downstream 148145 96711626 ~ 96711975 (-) True G1130897
TU1286831 lncRNA downstream 154532 96701694 ~ 96705588 (-) False G1130893
TU1286829 lncRNA downstream 154532 96701719 ~ 96705588 (-) False G1130893
TU1286897 lncRNA upstream 7328 96874790 ~ 96878188 (-) False LOC110487148
TU1286900 lncRNA upstream 7328 96874790 ~ 96878188 (-) True LOC110487148
TU1286957 lncRNA upstream 40149 96907611 ~ 96908372 (-) True G1130962
TU1286962 lncRNA upstream 55972 96923434 ~ 96923957 (-) True G1130967
TU1286969 lncRNA upstream 73179 96940641 ~ 97020117 (-) True G1130970
LOC110485334 mRNA downstream 14935 96841611 ~ 96845185 (-) True LOC110485334
XM_036939560.1 mRNA downstream 106699 96728982 ~ 96753421 (-) True LOC118937835
XM_036939558.1 mRNA downstream 131189 96714290 ~ 96728931 (-) False LOC110518479
XM_036939381.1 mRNA downstream 223009 96633414 ~ 96637111 (-) False eef2kmt
XM_036939373.1 mRNA downstream 250001 96605374 ~ 96610119 (-) True LOC110494398
XR_005035252.1 mRNA upstream 7322 96874784 ~ 96897190 (-) False LOC110487148
XM_036939389.1 mRNA upstream 7328 96874790 ~ 96897190 (-) False LOC110487148
XM_036939395.1 mRNA upstream 31330 96898792 ~ 97020167 (-) False LOC110519445
XM_036939390.1 mRNA upstream 31330 96898792 ~ 97043389 (-) False LOC110519445
XM_036939391.1 mRNA upstream 31330 96898792 ~ 97043389 (-) False LOC110519445
TU1286846 other downstream 144485 96714791 ~ 96715635 (-) True LOC110518479
TU1286832 other downstream 154532 96702407 ~ 96705588 (-) True G1130893
TU1286238 other downstream 424770 96392399 ~ 96435350 (-) True LOC110516715
TU1285748 other downstream 1013837 95845107 ~ 95846283 (-) False G1130145
TU1285638 other downstream 1233955 95625758 ~ 95626165 (-) True G1130049
TU1286950 other upstream 108713 96976175 ~ 96981940 (-) True LOC110519445
TU1286954 other upstream 236028 97103490 ~ 97106756 (-) True LOC110515892
TU1287026 other upstream 290957 97158419 ~ 97163104 (-) True LOC118936515
TU1287311 other upstream 511086 97378548 ~ 97416568 (-) True G1131229
TU1287312 other upstream 515638 97383100 ~ 97424120 (-) True G1131230

Expression Profile