RNA id: XM_036939411.1


Basic Information

Item Value
RNA id XM_036939411.1
length 2409
RNA type mRNA
GC content 0.51
exon number 13
gene id LOC110539076
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 97620303 ~ 97715255 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCAAACCGGCACGCtgcagtgtcagtgtgtgtgagcaagggtGTGTTAGCTGTTCTGTTGACGGTATAGTGTGTTAGCTGTTCTGTTGACGGTATAGTGTGTTAGCTGTTCTGTTGACGGTACAGTGTGTTAGCTGTTCTGTTAACGGTACAGTGTGCTAGCTGTTCTGTTGACGGTATAGTGTGTTAGCTGTTCTGTTGACGGTACAGTGTGTTAGCTGTTCTGTTAACGGTACAGTGTGCTAGCTGTTCTGTTGACGGTATAGTGTGTTAGCTGTTCTGTTGACGGTACAGTGTGTTAGCTGTTCTGTTGACGGTATAGTGTGTTAGCTGTTCTGTTGACGGTATAGTGTGTTAGCTGTTCTGTTGACGGTATAGTGTGTTAGCTGTTCTGTTGACGGTACAGTGTGTTAGCTGTTCTGTTGACGGTTCAGTGCTGGAGCGCTGGTGTAGTGTGTTCGTCGCTGGTCTTCTTCTATCAAAATTTCTGTGGATTGTAATTGGAGGAATACTGTTTGGGCTGGACCtattggactgtgtgtgtgtgttcggacCTGGcatacacacgtgtgtgtgtgtgtgtatgaacgaTCTATATTGTGACTGAACAACACGTGTGTATGAACGATCTATAGTGTGACTGAACAACACACGTGCAGACGGTAATTGTTAGGAGGGTGTGGATTACCCGTGTCTGGGCAGTGTGTGTGGATGTCTGTGGCAGTGGAATCAGGAATGGACAGCACacttcagaggagaggagagagccccccTGCAATGGACTTCACGaACGGCGAGGCCCGACTGGGCCCTCCCATCATCATGTGTACCCGTCCATACCCAGACTGCAGTGTGGAGCAGGGGGAGTGTTGTGACATGGACAGCACCAATGAGAGCGGTGTGGGCTCTGACACCTCTGACGGGGGGCGGAGCaatgagaaggaggaggggctagGTGGACTGTTCAACAATTCTGGCCAGCTGATTGGCTCTGCTTCTGCGTCCGTCTTCTCGGGGGAGGAACAGTTTGAGGACTACGGAGAGGGGGAGGACGTGGACTACACTCCCAGCAGCCCTTGCCCCGACGATGACGCTCGCACCAACGGCTTCTCAGACCTCGGCTCCTCCCTGCCCTCCAGtgCTGGTCAGACCCCTCTGAAGATGTGTCACCTGTACaacagtgatgtgttggatgtCTATTGTTCTCAGTGCTATAAGAAGGTTAACCTGCTCAACGACCTGGAGGCCAGGCTCAACAACCTCAGAGCCAACagCCCCAACAGAAAGATATCCAGCACTGCCTTTGGACGTCAGTTGTTCCAACACAACCACAGTGCTTTTAGCAGCAGTCAGGGAAGCACAGAGGACCTGTTCAGAGACTCCATCGACTCTTGTGATGTGGACATTACTGAGAAGGTGAGTTACCTGGAGAAGAAGGTGACCGAGCTGGAGAATGACAGTCTGGCTAATGGAGACCTCAAGTGTAAACTCAAACAGGGCAACACACAGCTAGTACACAgggtTCATGAGCTGGAGGAGCAGCTGAAGGAtcaggagagcagagcagatcaGACCCTGGAGGAagagacacatagacacagagagaccTACTgcaagatggagagagacaagAACACGGACATAGAGCTGCTCAGTAACAGAGTTcagcagctggaggaggagaaTGGGGAGATGAAACTAAACGTGTGTAAACTGAAGTCTCAGACTGAGAAACTAGACCAGgagAAGCAGCGTATGACAGACCGGTTAGAGGACACCAGTCTGAGGCTGAAGGATGAGATGGACCTCTACAGGAAGATGATGGACAAGCTGTGGCAGAACAGACATGAAttccagaaggagagagaggccatGCAAGAgTTGATAGAGGACCTGCGTCGGGAGTTGGAGCACCTGCAGCTGTTTAAGCTGGGTTCAGAGGCGGGGCAGGGGGCGGGGCTATCAGAATACAACGCCAAGACACGGGAAATAGAGATGGAGCATGAGGTCAAGAGACTCAAACAGGAGAACTTTAAGCTGCGGGACCAGAACGATGACCTGAACAGTCAGATCCTCAGTCTGAGTCTGTATGAAGCTAAGAACCTGTTTGCCTGCCACACCAAGGCCCAGTCACTGGCTGCTGAGATCGACAACGCTTCTAGGGACGAGTTGGTGGATGCTCTGAAGGAACAGGAGTGTGTTAACCTACGTCTGAGACAGTATATGGATAAAATCATCTTGGCCATTCTGGACCACAACCCCTCTATCCTGGAGATCAAGAGTaacagttaaacacacacacacacacacacacacactcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1287889 lncRNA downstream 1123 97615964 ~ 97619180 (-) False G1131625
TU1287893 lncRNA downstream 1123 97615964 ~ 97619180 (-) True G1131625
TU1287473 lncRNA downstream 6535 97613530 ~ 97613768 (-) True G1131360
TU1287463 lncRNA downstream 14559 97605529 ~ 97605744 (-) True G1131350
TU1287450 lncRNA downstream 18289 97600932 ~ 97602014 (-) False G1131343
TU1287913 lncRNA upstream 8953 97658540 ~ 97659374 (-) True G1131639
TU1287929 lncRNA upstream 59201 97708788 ~ 97709521 (-) True G1131653
TU1287987 lncRNA upstream 133578 97783165 ~ 97783375 (-) True G1131701
TU1287988 lncRNA upstream 134856 97784443 ~ 97784734 (-) True G1131702
TU1287955 lncRNA upstream 143286 97792873 ~ 97793378 (-) True G1131669
XM_036939408.1 mRNA downstream 53850 97528138 ~ 97566453 (-) False LOC110538805
XM_036939406.1 mRNA downstream 111120 97450528 ~ 97509183 (-) False LOC110538797
XM_036939407.1 mRNA downstream 111120 97450528 ~ 97509183 (-) True LOC110538797
XM_036939562.1 mRNA downstream 173088 97443985 ~ 97447215 (-) True LOC118937836
XM_036939405.1 mRNA downstream 195970 97414572 ~ 97424333 (-) True LOC118937808
XM_036939415.1 mRNA upstream 66151 97715738 ~ 97740971 (-) True LOC110538885
XM_036939413.1 mRNA upstream 114602 97764189 ~ 97782859 (-) False LOC110538882
XM_036939414.1 mRNA upstream 114602 97764189 ~ 97787224 (-) False LOC110538882
XM_036939419.1 mRNA upstream 216067 97865654 ~ 97878576 (-) False LOC110487093
XM_036939423.1 mRNA upstream 268150 97917737 ~ 97943870 (-) False LOC110487090
TU1287396 other downstream 54115 97559673 ~ 97566188 (-) True LOC110538805
TU1287354 other downstream 158032 97461813 ~ 97462271 (-) True G1131270
TU1287338 other downstream 186885 97430085 ~ 97433418 (-) True G1131255
TU1287312 other downstream 196183 97383100 ~ 97424120 (-) True G1131230
TU1287311 other downstream 203735 97378548 ~ 97416568 (-) True G1131229
TU1287932 other upstream 63047 97712634 ~ 97713116 (-) True G1131656
TU1287960 other upstream 129068 97778655 ~ 97782823 (-) True LOC110538882
TU1288015 other upstream 203199 97852786 ~ 97853593 (-) True G1131720
TU1287949 other upstream 208012 97857599 ~ 97860518 (-) True G1131666
TU1287948 other upstream 310205 97959792 ~ 97974720 (-) True LOC110485313

Expression Profile