RNA id: XM_036939414.1


Basic Information

Item Value
RNA id XM_036939414.1
length 3202
RNA type mRNA
GC content 0.51
exon number 15
gene id LOC110538882
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 97764189 ~ 97787224 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAGAGAACAAAGCAATATGGATTAATTTAGTTGGGATTCGTTGTAATAACGATTTAATCCAGAAGTATGGTTTTTTTTGTCTGAAGGAAGAAACACTTAATAAAATAATCACCATAGTTACCGTTGGACTAATTAATTTGGATTCTACTGGATGGCCTAAAgagtaataaagtaatgactgaACTAAATGAATATGCTAAACTGGTCCCCCAGTGTGTCGACTCAGTTTCCTGCTCTGTGGATTCAGACCTCTCCTTTTGTCCTCTGCTCTCTGAGCCACACATTTAGAAGAAGACATTGTTTTGTAAGTCATAGACTTCTAACTCGTATTTCTCACCATGGACGGTGCATTGACTACTGAGCATCAGGAGGATGGGTCTTTGCGGAGGAGAAAGACCGAAGACGAAGGAGAGGATCAGATCGGGAGCAAGTTGTCAAAAACGGAAACCACCGGTTTGGAGTCTTGCTTGGATGAGCCAGTTGAGTTGAGAAGTGTTCATGAAGTCATCAAGTATGGAGCCTCGTCTCTGCCAGCTAAGCACTATGACCCGGACACCACCGAGCCAATCAGCTCCGGCCTTCAGTCCCTGGAGGAGCTGTTGTCGTGGAAACGCAGCGAGGCCAACCCCTTCAACGTGGCGACGGTGCCCCTGGCCAATCGGGAGCCTTCTCTGACCAGCACGCCGCACCGGACTCTGGTGAGTCACGACATGATGGGCGGATACCTGGATGACAGGTTTCTGCAGGGAGCAGAGTCGGATGCTCCCTATGTGTTCTACCACTGGCAGTACATCGACGTGTTTAACTACTTCAGCCACAACACGGTGACCATCCCCCCGTCCGTCTGGACCAACGCCGCTCACAGACACGGAGTCATCGTCCTGGGCACCTTCATCACTGAGTGGACGGACGGGGGGAAGATGTGCGAGGTCTTCCTGAAAGAGGAGGAGTCTTACAGGGCCGTAGCTGATAGGCTGGTTCAGATAGCCCACTGTTACGGCTTCGATGGTTGGCTGATAAACATCGAGAACCCTCTCGGTGAGACGGCTGTGAAGAACACTCCTCTGTTTCTACGTTATCTGACGGACCAGATGCACGAGAGAGTCCCTGGTAGTATGGTGTTGTGGTATGACTCTGTTCTGGAGAACGGACAGCTCAAATGGCAGAATGAACTCAACCCATCCAACAGAGTGTTTTTCTCAGCGTGTGATGGTATCTTCACCAACTATAACTGGACAGAGCAGAACCTGGAGGGAATGAAGGCCTACTCAGCTGCTCAGGGCCGGCTGGCGGACATCTTTGTTGGGGTGGACGTGTTCGCCAggggagaggtggtgggggggaaGCTGGAGACTAATAAGgctCTGGAGATGATTCGTAAACATGACTTCTCCACGGCCATCTTTGCTCCAGGCTGGGTGTACGAGTCCATCCCAGACAAGACTGACTTCAGGAAGGAGCAGGACAAGTTCTGGTCTCTTCTGTCTGACTTCCTGTATGTCCACCGGCCCTCGTCGCCCCTCCCTTTCGTCTCCTCCTTCTGCCAGGGTGCTGGGACCAGCCTCTACTGGAGGGGACAGCGTGAGGTGGATCGTAGCTGGTTCAACCTAGATGCCCAGGAGCTGCAACCCCTATACTACAGAGAGACCCTCGAGGGGGAGGGCTGGCTGAGGACCCAGGGCTGCCCTGAAGATGCCTGGAGCGGGGGCAGCTCTCTGCTCGTAGAGGGTGTCCTACCCTCCATGCTGTCTAAAGTCTGCGCCAGgaTCTTTTCTCTCCAGGTGCCTCTATCCTCCAGGGTCTTTGTGTCTCTGATCTATAAGCCGTCTCCTGGGGTCACTGTCTCTCTGGAGTTAAAGACTGCTGATGCTACACTCTGCACACACAGAGGTgttcaggatatacctaccagcAGTATTGAGCCTGTTGCTTTAACAGAGGACCACCAGTTGATGAGACAGTTCTCTCAGAGCTGTGGACAGTGGAACCCAGACGGATGGACTGTCAGgtgtTCCCAGTTGGAGCTGCAGGGCTGTGCTCTGAGGGATGTGTGTGTCAGCGTGCAGCGTGATGGAGGAGATAAGGACACACCTTTCAAATGCCGGGTCGGAGAGattatgATCCTGGATGCTGAGTCCCTCTCCGTTCCTCCCCTCCCAgtgcagagtgtgtgtctctatgaCGTGGTGTGGCTGAGGGGCGCCAATAAACTTAATCTCAACGCCACCCTGCGCTGGCGTTACCCTGCCCAACTCGTACGCCACTTCCTGGTGTACTGGCGCCGGCTGAGGGGTCCAGACCCCCGGATCCCATCTGGCAAGCTGGCCCTGATTGGCCGAGCCTACTGCCCCTTATTCCGGGTGACCGAGCTGACGGTTCCAGAACCTCCAGGTCTTCTAGAACTGGTGGTGGAACCCGTGTCCCGGGAGGGCTTCCGTGTTCCTGAGTCCCAATGGGGGAGGAGGAGTCTCAGTTATACTGAGGAGAGGACGGACCAATCATAAGACACTGAAAGGGTAGCAATGTACTGGCTGTCCCaaattgaaccctattccctatatagtgcactacatggacccatagggctctggccaatgtagtgcactatatagggaatagggtgccatttgggatgtactaCTACTCTACTTCCTGGCCAGTCAGTAAGCTAGTTTGTAGTGATGTGATCTCCTAGTCACCTATAGAGTTAACCATTTTTTTTCTAGTCAAgaaagtattaaaaaaaaaatatatatataattatctTCCCAGAACAATTAGGGGAACTCAAGGCCAGAATTCAACATGAAGCGCGCTGTAGGTACTTCCTGATTGAGCCGACATCTGCAGCCCTTCCTGTGCAGAGCAAGGGAAGGATACTTCAAGCAGAACATAGAGATTCCccgatacatagagagagactccCCAATTGGGCAAAAGACCTTCCCCTCTGCGACCCAGAAACCAAATGGTCAAGGAGCGTGTCAATACGTTAATCGGAGAACGAAGGAGGCTGTGGCCCCTCCCATTACGGATTTCCAGAGGATGTGACAGGAAGTGACACACACCCTTTTATTTTTTCTAAGGAGAAAAGCAAGCACGCGTTTAAACTACACGCTACGCATCCTTTTATCTAGAAAAATATTATACACCACATGCTAAATGAATTGAAGCATCAATAAAGATACTATTTAAAAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1287929 lncRNA downstream 54668 97708788 ~ 97709521 (-) True G1131653
TU1287913 lncRNA downstream 104815 97658540 ~ 97659374 (-) True G1131639
TU1287901 lncRNA downstream 131702 97630348 ~ 97632487 (-) True G1131628
TU1287889 lncRNA downstream 145009 97615964 ~ 97619180 (-) False G1131625
TU1287955 lncRNA upstream 5649 97792873 ~ 97793378 (-) True G1131669
TU1287991 lncRNA upstream 10983 97798207 ~ 97798453 (-) True G1131705
TU1287995 lncRNA upstream 20707 97807931 ~ 97808469 (-) True G1131707
TU1287996 lncRNA upstream 21691 97808915 ~ 97809152 (-) True G1131708
TU1287997 lncRNA upstream 30863 97818087 ~ 97818632 (-) False G1131709
XM_036939415.1 mRNA downstream 23218 97715738 ~ 97740971 (-) True LOC110538885
XM_036939409.1 mRNA downstream 48934 97620303 ~ 97715255 (-) True LOC110539076
XM_036939412.1 mRNA downstream 110038 97620303 ~ 97654151 (-) False LOC110539076
XM_036939411.1 mRNA downstream 114602 97620303 ~ 97649587 (-) False LOC110539076
XM_036939408.1 mRNA downstream 197736 97528138 ~ 97566453 (-) False LOC110538805
XM_036939419.1 mRNA upstream 78430 97865654 ~ 97878576 (-) False LOC110487093
XM_036939423.1 mRNA upstream 130513 97917737 ~ 97943870 (-) False LOC110487090
XM_036939424.1 mRNA upstream 130513 97917737 ~ 97943871 (-) True LOC110487090
XM_021559005.2 mRNA upstream 160054 97947278 ~ 97949231 (-) True LOC110487083
XM_036939425.1 mRNA upstream 172529 97959753 ~ 97974748 (-) False LOC110485313
TU1287932 other downstream 51073 97712634 ~ 97713116 (-) True G1131656
TU1287396 other downstream 198001 97559673 ~ 97566188 (-) True LOC110538805
TU1287354 other downstream 301918 97461813 ~ 97462271 (-) True G1131270
TU1287338 other downstream 330771 97430085 ~ 97433418 (-) True G1131255
TU1287312 other downstream 340069 97383100 ~ 97424120 (-) True G1131230
TU1288015 other upstream 65562 97852786 ~ 97853593 (-) True G1131720
TU1287949 other upstream 70375 97857599 ~ 97860518 (-) True G1131666
TU1287948 other upstream 172568 97959792 ~ 97974720 (-) True LOC110485313
TU1288159 other upstream 471658 98258882 ~ 98259687 (-) True LOC118936513
TU1288236 other upstream 595746 98382970 ~ 98383815 (-) True G1131863

Expression Profile