RNA id: XM_036939438.1


Basic Information

Item Value
RNA id XM_036939438.1
length 2414
RNA type mRNA
GC content 0.51
exon number 16
gene id LOC110516721
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 98187732 ~ 98218285 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGACGTATGTTGGTGTCACTGTCCCACGTAACAGGTTGTTAAACCAGAGTTTAGCCGAGCTGTCATTGGTTGATAAATCCGTCCTCGCGCTTTCTGGCCCCTCTCACGCAATCTCTGACGCGCGGTCAATGGAATAAACTACTGTCCCAGCCCCGGGTATACCATTACACCTGTGTGATCACTTTTTTTCATGAACATTTCTTACCTGGATTTTCTTCTTTAGGTCCGCGTATCGACTGACCGCAAACATGACAATTAGGACGCTGAGAGATTATGGTCAGCACTACCGACCACGGATGGCATGCCTAAAAAATGTGGAGGTGTTTGTGGTTGAGATGCAGGATCCTAAGAGTGGGGTGAAGGGTGCCGACCAGAAACTCAATGTAACCATTATCCCACACGTCATCAACGGGCAGGACATTCTAGCATGGATTGTCACCAAAATGAAGGTTACCACAGAAGaGGCCCAGGCGTTTGGGACCATGCTGGTGGCCTACGGGTACATCTACCCCCTCCAGAACCACAGGAAGTTGGTCCTGGTCCCCGACAGCACCCTCTACCGCTTCCAGACCCCTTATTTCTGGCCCGTGCAGAAGTGGCCCGCTGAGGACATAGACTATGCCATCTACCTGGCCAGGAGAAACATCCGGAAGAAGGGGATGCTGGAGCCCTATGAGCAGcaacactacgaCAATCTCCACAAATGGATGAACCCCAAGTGGGATTTCATCGTGATGCAGGCTACCGAGCAGTACAAggctAATAAAGAGAGGAAGAAGCCAGACAGAGTGGTGTTGGACTGTCAGGAGAGAGCCTACTGGATAGTACACAGGCCACCAGTGTTGACCTTCGACGTGGTCAGGAGAACCAACATTTTCCTTACACAAGCCCTAATGAGGTCAGCTGTCAAATCGTCTATGTCCCTCACAGCCTTTGTCAAGTTCGTGACAACCCACCACAATCACGACCCGTTCCTGACAACCCCTGTCCCCAGCAACCCTTGGATAACGGACAGTGATGAGTTCTGGCAACTCAACTCAAGAAGtGTGGACATCCCCACTAAGTTGAGTGTGGAGCGTTGGGTCTTGAGCTTCTGGGAGCTGATCAGTGACCCACGAGGCAGAGTCGACTTCAAGCTCTTCCTCAAGAAGGAGCACagtgcgGAGAACATGGCGTTCTACGAGGCAGCTGAGGAGATGAGGTGGGGAGCAGCGTCTGCCATACCAGAGAAATCCCAGTTCATCTTCAAcacctTTCTGAAGCCTGGAGCTCCTCGATGGATCAACATCGATGGTCGTACCATGGGGCTGACAGTGAAGGGTCTGGTTGTTCCTCACCGCTACGTGCTGGACGCTGCCCAGACACACATCTTCCTGCTCAtgaagaaggataCCTTCTACCGGTACCTGAAGTCTCCAGTCCATAAAGACATGCAGAAGAGGGCTCTGGTCCCGGCGCCCCACGTCTTCACtgaTGCCCAGTTGGAGGCCAATGTGAGGAATCGTAACCCAGGCGTCAGCCCCATCCTGCagtggcagcaggaggaggaggagaaggcagCAGCAGCTGTTGCTGCCAGGCCCATTGACGTCAAAGCCATGGTGGCCACCAACAAGCTGGACAGGAAGTAGAGAGGGCCCAGGGCATCATGGGAAATGGAGTTTAATATACATGCAGTTGTTCATCTAATATATATTTGGTTTCCATGGAGATGGTGTTACATAGGACTACTTTATGTCCTAAATATTGGATTTATTAGCTATTGTTTTAATGGAGATATTGGTATTGTATAGAATCATTTATGTCCTCGACAACTGATGTCAAGCCAGTACGGATTGGATGATTGAGGGAAATAAACTATTGTCTGTTGAGTACCTGTGTTGCGTTAAGGACATTTACTGAACTGAGAACGAATCTGCTGATGATAAAATCTACTTTAGTTCAGATGGACAGAGAACAGGGACTGTCTGTAGGGGCCCTCTGctacacaacacacagagaacagggaCTGTCTGTAGGGGCCCTCTGCTACAcaacacactactacacaacacacagagaacagggaCTGTCTGTAGGGGCCCTCTGctacacaacacacagagaacagggaCTGTCTGTAGGGGCCCTCTGctacacaacacacagagaacagggaCTGTCTGTAGGGGCCCTCTGCTACAcaacacactactacacaacacacagagaacagggaCTGTCTGTAGGGGCCCTCTGctacacaacacacagagaacagggaCTGTCTGTAGGGGCCCTCTGctacacaacacacagagaacagggaCTGTCTGTAGGAGCCCTCTGctacacaacacacagagaacagggaCTGTCTGTAGGGGCCCTCTGCTACACAACATACTGCTACACAACACACTACTATATCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1287721 lncRNA upstream 47411 98137923 ~ 98140321 (+) True G1131508
TU1287743 lncRNA upstream 53382 98134151 ~ 98134350 (+) True G1131518
TU1287731 lncRNA upstream 63684 98090990 ~ 98124048 (+) False G1131510
TU1287732 lncRNA upstream 64007 98090990 ~ 98123725 (+) True G1131510
TU1287730 lncRNA upstream 94835 98090990 ~ 98092897 (+) False G1131510
TU1287796 lncRNA downstream 1468 98219753 ~ 98224410 (+) False G1131557
TU1287793 lncRNA downstream 1683 98219968 ~ 98225599 (+) False G1131557
TU1287794 lncRNA downstream 3736 98222021 ~ 98224410 (+) True G1131557
TU1287800 lncRNA downstream 11856 98230141 ~ 98231090 (+) False G1131560
TU1287801 lncRNA downstream 11856 98230141 ~ 98231090 (+) False G1131560
XM_036939566.1 mRNA upstream 65654 98101643 ~ 98122078 (+) True LOC118937837
XM_036939565.1 mRNA upstream 97359 98065664 ~ 98090373 (+) False LOC110485325
XM_036939434.1 mRNA upstream 128281 98022211 ~ 98059451 (+) False LOC110487112
XM_036939435.1 mRNA upstream 128281 98022211 ~ 98059451 (+) False LOC110487112
XR_005035254.1 mRNA upstream 128281 98022211 ~ 98059451 (+) False LOC110487112
XM_036939451.1 mRNA downstream 41285 98259570 ~ 98266027 (+) False LOC118936514
XM_036939460.1 mRNA downstream 207475 98425760 ~ 98561686 (+) False LOC110487124
XM_036939458.1 mRNA downstream 209626 98427911 ~ 98561686 (+) False LOC110487124
XM_036939459.1 mRNA downstream 209627 98427912 ~ 98564239 (+) False LOC110487124
XM_036939457.1 mRNA downstream 209629 98427914 ~ 98564239 (+) False LOC110487124
TU1287587 other upstream 365675 97820724 ~ 97822057 (+) True G1131438
TU1286655 other upstream 1024653 97162262 ~ 97163079 (+) True G1130780
TU1286316 other upstream 1485795 96678532 ~ 96701937 (+) True LOC118937804
TU1286336 other upstream 1554280 96630566 ~ 96633452 (+) False G1130570
TU1287770 other downstream 41724 98260009 ~ 98266027 (+) False LOC118936514
TU1287769 other downstream 41877 98260162 ~ 98266027 (+) False LOC118936514
TU1288518 other downstream 506572 98724857 ~ 98725197 (+) True G1132060
TU1288511 other downstream 545674 98763959 ~ 98767257 (+) True G1132058
TU1288549 other downstream 563854 98782139 ~ 98783327 (+) True G1132082

Expression Profile