RNA id: XM_036939448.1


Basic Information

Item Value
RNA id XM_036939448.1
length 3778
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC110487128
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 98265920 ~ 98283153 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGGGGCGGGGCCAAGATTAATTGTTAATGTGTGACTAAACTATCTTGCTGAACGTAAACACAACCCGAGAAGAAGACGGGTTGAAGATCTTCTGGTTTACATACTTGGTGGACCAGTCTGCCTGCGGGAATGCTCAATCCTCAAAGATCTTTATCTGAACTGCCAAAGATGTCGGGTCCAAGTCAAGCCGAGAGGGCTGTTTTGGAGGAGGAGTTTAACTGGTTGCTGAAAGAGGAGGTCCATGCTGTTTTGAAGCAGCTCCAGGATATACTGAAGGAGGCATCCAGGAGATTCTCCATTCCTACCCCAGGACTGGAGAACCAATTGAAACAGGAGAACTTCATCCTGGGCAGCTCAACCATGGACCAGGTGAAAGGAGTACTGACTCTACAGGGAGAAGCCCTGACTCAAGCTGACATCAATCTGAAAACTGCTAAAAGCAACCAAGTGATGCATTTCACATTCAGGGATGATAAGCACTGGAAACTACAACAGATCCAGGATGCTAGGAACCATGTGAATCAGGCTCTGCAGCTGCTGAGTGGTAGAGATGAGAGCTACCACTTTAAGACTGGGGCTGAGGTCAACaagCTGATGGACGCGGTGATGCTCCAGCTGACCAGGGCTCGTAACCGCCTCACCACTCCGGCAGCCATGACCCTGCCGGAGCTGGCCACCAGCGGCCTCATGaAAATGTTCACTCCTCCAATGCCAGGCGATGTGATGGTGAACTTCTATATCAACCTGAGTAAGCTGTGTCTGACTGTCTACCAGCTGCACGCAATGCAGCCCAACACCACCAagAACTTCAAGCCATCTGGAAGCTCCGTGTTACACAACCCCGGAGCCATGTTCGAGCTGAACAATGCTAAGTTTGAGGTGAGCCAGGTTCACAAGGTGGAGTGTGTTGTCCCCTGGCTCAACAACACCCTGATCTTCTTCACCATCTCACTGCAGCTCTGTCAGCAGCTCAAGGACAAGaTTTCTGTCTTCTCTAGTTTCTGGAACTACCGACCGTTCTAACCTCCTGCAGCTAGCCGACCGTCAGAATGCCTAGGGGTTCTAACCTCCTGCAGCTAGCTGACCGTCAGAATGCCTAGGAGTTCTAAACATCCTGCAGCTAGCTGACCGTCAGAATGCCTAGGTGTTCTAACCTCCTGCAGCTAGCTGACCGTCAGAATGCCTAGGGGTTCTAACCTCCTGCAGCTAGCTGATCGTCAGAATGCCTAGGGGTTCTAACCTCCTGCAGCTAGCTGACCGTCAGAATGCCTAGGAGTTCTAACCTCCTGCTAGCTGACCGTCAGAATGCCTAGGCGTTAGCTGACCGTCAGAATGCCTAGGCGTTAGCTGACCGTCAGAATGCCTAGGTGTTCTAACCCCCTGCAGCTAGCTGACCGTCAGAATGCCTAGGTGTTCTAACCTCCTGCAGCTAGCTGACCGTCAGAATGCCTAGGTGTTCTAACCTCCTGCAGCTAGCTGACCGTCAGAATGCCTAGGTGTTCTAACCTCCTGCAGCTAGCTGACCGTCAGAATACCTAGGTGTTCTAACCTCCTGCAGCTAGCTGACCGTCAGAATACCTAGGTGTTCTAACCTCCTGCAGCTAGCTGACCGTCAGAATGCCTAGGTGTTCTAACCTCCTGCAGCTAGCTGACTGTCAGAATGCCTAGGTGTTCTAACCTCCTGCAGCTAGCTGACCGTCAGAATACCTAGGTGTTCTAACCTCCTGCAGCTAGCTGACCGTCAGAATGCCTAGGTGTTCTAACCTCCTGCAGCTAGCTGACCGTCAGAATGCCTAGGTGTACTAACCTCCTGCAGTTAGCTGACCGTCAGAATGCCTAGGGGTTCTGTCCAAATCCTTCACACCAACCAACCCAGATAAAAGGGATGTCTTGAAAATATTGTCTGAATTGAAGTGGGTTTTGTTTGTATAATTTACAGGAGAACAGCCGGATCAAAGTCCAAATACATTACCAGTGTTTAGTATTCCAGGGTTTTAGGGCCCATCCATGTGTTACAGCTGCTTTAATTCAGTCCCAAatcaaaccctaacccctagactACACTCCCTACTTGTGAAGAAAGTATAGGGCTAAGCAATATGGTGGGGCTACTACCATGTTGCTATATCTATCCAATACATTGTGTTTCCCCTAGATGGGGGtcgttagcgcaatgactagaagtctatgggaatgaatataggggaaacactgcatgactagaagtctatgggaatgaatataggggaaacactgcatgaCTAGAAGTCTATGGGAATGAATATAGGGGGAAATACTGCATGACTAGAAGTCTATGGGAATGAATATAGGGGGAAATACTGCATGACTAGAAGTCTATGGgaatgaatataggggaaacactgcatgaCTAGAAGTCTATGGGAATGAATATAGGGGGAAACACTGCATGACTAGAAGTCTATGGgaatgaatataggggaaacactgcatgactagaagtctatgggaatgaatataggggaaacactgcatgaCTAGAAGTCTATGGGAATGAATATAGGGGGAAACACTGCATGACTAGAAGTCTATGGGAATGAATATAGGGGGAATACTGCATTCTGATCTAGACAAGTAGGGACTAGGGGTTGATTTAGGATTGGGTGCATGTATCTCTCTGTGCGTCATCTGTTGTATAGTACTAACTAACTAGGACCTCCCTGTTGTATAGTACTAACTAACTAGGACCTCCCTGTTGTATAGTACTAACTAACTAGGACCTCCCTGTTGTATAGTACTAACTAACTAGGACCTCCCTGTTGTATAGTACTAACTAACTAGGACCTCCCTGTTGTATAGTACTAACTAACTAGGACCTCCCTGTTGTATAGTACTAACTAACTAGGACCTCCCTGTTGTATAGTACTAACTAACTTGAACCTCCCTGTTGTATAGTACTAACTAACTTGGTTGGACTTGTATAGTACTAACTAACTTGGTTGGACCTCCCTGTTGTATAGTACTAACTTGGTTGGACTTGTATAGTACTAACTAGGACCTCGTTATGAATCAATGGATCAGCTTGTGTTGTTTTAGTCTGAAACACTTCTCTTGTTACTGAATACTAACGTTCCTCCTTTCCACACACCCTTTTCACACTATAATAGCGACCAAAAGATATTTTAAATTTTAATTTATGGTTTATTTGGGTAGGGACCGATACAAACGCATCGTCTTCTCCTACACGGTTCCAGCATCTACGGTTAATGAGTAACCAGGCCAGCTTGGTTTGCTCAGCAGTGTGAAAAAGGTATTGGAAACTAAATTTGTCAAGCAGATTGGTTTACCACAGTAGGACATACTGTTATTTTGTGTAGACTACACTACTCAGCAGTAGTATGAGACATGAAACACAGTGACTCTTCAGTGAAATTAACTTGTAAGGTTTCTGACTCTATATTCCTTGGAATGCCGCTTTTATGTCAAGTGTAAAGGAAAACGGACATTCCCAGCTTTTGAAAAGTAAACGTTCTCCTCAACAATAAGCTGTTATTCGTCATTGTATCAGTTCATTTTAATGTGTTGTTTTGctaatgattttatttattcAATTGTTTAATTTTTGCACTTGTTACTTTGCCTTTTGTTGATTCCCTGTGAAGTGAAGATCCCATTCCAATGTCGAACAAAAATCATTATTACTGCAAGTGTTTTAAAAACTGTTTAGAGATGCGTACAATGTATATGTTGTGGACCATATGATCTATTATCTGTGCAATAAAGAGGTGTTATACTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1288186 lncRNA downstream 50208 98213983 ~ 98215847 (-) False G1131828
TU1288193 lncRNA downstream 50208 98214583 ~ 98215847 (-) True G1131828
TU1288187 lncRNA downstream 51767 98213480 ~ 98214288 (-) False G1131828
TU1288170 lncRNA downstream 54414 98211005 ~ 98211641 (-) True G1131814
TU1288173 lncRNA downstream 58818 98206763 ~ 98207237 (-) True G1131815
TU1288152 lncRNA upstream 311 98283462 ~ 98285938 (-) False LOC110517726
TU1288153 lncRNA upstream 311 98283462 ~ 98285938 (-) False LOC110517726
TU1288154 lncRNA upstream 311 98283462 ~ 98285938 (-) True LOC110517726
TU1288207 lncRNA upstream 8994 98292145 ~ 98295483 (-) False G1131839
TU1288208 lncRNA upstream 12077 98295228 ~ 98296429 (-) True G1131839
XM_036939439.1 mRNA downstream 6411 98230363 ~ 98259644 (-) False LOC118936513
XM_036939440.1 mRNA downstream 6411 98230363 ~ 98259644 (-) False LOC118936513
XM_036939436.1 mRNA downstream 79766 98137074 ~ 98186289 (-) True LOC110485327
XM_036939426.1 mRNA downstream 264462 97979771 ~ 98001593 (-) True LOC110518411
XM_036939429.1 mRNA downstream 264463 97979771 ~ 98001592 (-) False LOC110518411
XM_036939442.1 mRNA upstream 311 98283462 ~ 98316903 (-) False LOC110517726
XM_036939444.1 mRNA upstream 311 98283462 ~ 98316903 (-) False LOC110517726
XM_036939447.1 mRNA upstream 311 98283462 ~ 98316903 (-) False LOC110517726
XM_036939443.1 mRNA upstream 311 98283462 ~ 98316904 (-) False LOC110517726
XM_036939446.1 mRNA upstream 311 98283462 ~ 98316904 (-) False LOC110517726
TU1288159 other downstream 6368 98258882 ~ 98259687 (-) True LOC118936513
TU1287948 other downstream 291335 97959792 ~ 97974720 (-) True LOC110485313
TU1287949 other downstream 405537 97857599 ~ 97860518 (-) True G1131666
TU1288015 other downstream 412462 97852786 ~ 97853593 (-) True G1131720
TU1287960 other downstream 483232 97778655 ~ 97782823 (-) True LOC110538882
TU1288236 other upstream 99819 98382970 ~ 98383815 (-) True G1131863
TU1288904 other upstream 723476 99006627 ~ 99010112 (-) True G1132328
TU1288947 other upstream 770353 99053504 ~ 99059256 (-) True LOC118937838
TU1289169 other upstream 808565 99091716 ~ 99092238 (-) True LOC110538840
TU1289204 other upstream 882797 99165948 ~ 99166607 (-) True G1132564

Expression Profile