RNA id: XM_036939567.1


Basic Information

Item Value
RNA id XM_036939567.1
length 999
RNA type mRNA
GC content 0.55
exon number 5
gene id LOC110487126
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 98566396 ~ 98571514 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGAGGATCCTCTCACTCTATATTCATCACTCAACACCACCAGCCTCCCCACTGCTCTCCACCCCACGAACAACAGTGCTGTTACGGACCTCGTGACCAACGCTACGGTCAAACCCTTCAGTGTGTTTCATGGGTGCGAGGAGAATGTGTCAGGGATCCTCTTCGACCTGTCTGTTCAGACCTTCAACGTGTTCCTGGGACTCCCCGCTAACATCTTAGTCATGGTGATTCTGGTCCGTAACCGTAAGGAGCCGTCCTCCTCAGACATCTTCCTGGGCTGTCTGGCCTTCATGGACGCTTACTTTGGCATCATGGTCCCCTTCAGCTATCTGAACATCTACTACTGGCACAGCAAGGATGTCTGGTCCGCTCTCATGTTCTCCTTCGGCGTCAAGGACACCAGCGGTCCTCTGTTCCTGTCCTGTATCTGTTTGGATCGGTTCGTGGCggtcctcttccctctatcctaCGGCCAGCTGAAGGACACCAAGTACAGGGTGTCTCTCTCGGCGGTGGTCCTGGGGCTCACCTTCACCTACGCCTCCGCCAAGACCATCGGGGGCCTGCACAACTTCGAGAAGGTCTTCACAGGGACGATCCTGGCAACGTTTGGCTGGATGGTGTTGTGTAACGGGGCCATCCTGGTGGCCCTGAAGAGGTCCAGTGGCTCTGGGAAGGACGACATGCACCCCATGAAGAAGAAAGCCTTCAAGATGGTGACGTCGGTCCTGTCCATCATCGTGTTCAACTACTTGCCTCCGGTGGCTCTGTTCCCTTTTGAGGACCACTACCCTCCGGACACGTTCCGCTGCCTGGTGCAGCCGGTGGGGTACGCCTTCGTTAACATCAGCAGTAGTATCCAGCCCATCATCTACCTCTCTAGACTGGAGAAGATCCCTTTCCTCCCTGAGGCCTGGAACAAGTggggctcctcctcctccaaggtGAAGGACAAGGAGGTGAAGGTGGAGACCAACGTTTCTTGTGAAATTAAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1288425 lncRNA downstream 4941 98560788 ~ 98561455 (-) True G1131995
TU1288401 lncRNA downstream 54118 98511591 ~ 98512278 (-) True G1131980
TU1288398 lncRNA downstream 56694 98509259 ~ 98509702 (-) True G1131977
TU1288391 lncRNA downstream 69234 98495879 ~ 98497162 (-) True G1131972
TU1288386 lncRNA downstream 76349 98489007 ~ 98490047 (-) True G1131969
TU1288434 lncRNA upstream 3892 98575406 ~ 98576626 (-) True G1132001
TU1288450 lncRNA upstream 43630 98615144 ~ 98617785 (-) True G1132012
TU1288456 lncRNA upstream 81477 98652991 ~ 98653513 (-) True G1132016
TU1288742 lncRNA upstream 108776 98680290 ~ 98680647 (-) True G1132228
TU1288743 lncRNA upstream 110804 98682318 ~ 98682578 (-) True G1132229
XM_036939452.1 mRNA downstream 185484 98333131 ~ 98380912 (-) True LOC110485331
XM_036939453.1 mRNA downstream 204150 98333131 ~ 98362246 (-) False LOC110485331
XM_036939456.1 mRNA downstream 210938 98333131 ~ 98355458 (-) False LOC110485331
XM_036939454.1 mRNA downstream 211187 98333131 ~ 98355209 (-) False LOC110485331
XM_036939441.1 mRNA downstream 249491 98283462 ~ 98316905 (-) False LOC110517726
XM_036939464.1 mRNA upstream 194591 98766105 ~ 98793385 (-) False LOC110514497
XM_036939466.1 mRNA upstream 194591 98766105 ~ 98806606 (-) False LOC110514497
XM_036939467.1 mRNA upstream 194591 98766105 ~ 98807008 (-) False LOC110514497
XM_036939463.1 mRNA upstream 194591 98766105 ~ 98906443 (-) True LOC110514497
XM_036939568.1 mRNA upstream 410247 98981761 ~ 99019633 (-) False LOC110539185
TU1288236 other downstream 182581 98382970 ~ 98383815 (-) True G1131863
TU1288159 other downstream 306709 98258882 ~ 98259687 (-) True LOC118936513
TU1287948 other downstream 591676 97959792 ~ 97974720 (-) True LOC110485313
TU1287949 other downstream 705878 97857599 ~ 97860518 (-) True G1131666
TU1288015 other downstream 712803 97852786 ~ 97853593 (-) True G1131720
TU1288904 other upstream 435113 99006627 ~ 99010112 (-) True G1132328
TU1288947 other upstream 481990 99053504 ~ 99059256 (-) True LOC118937838
TU1289169 other upstream 520202 99091716 ~ 99092238 (-) True LOC110538840
TU1289204 other upstream 594434 99165948 ~ 99166607 (-) True G1132564
TU1289215 other upstream 602151 99173665 ~ 99175908 (-) False G1132569

Expression Profile